Strain Fitness in Pseudomonas putida KT2440 around PP_2370

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
2,706,167	-		PP_2369	0.79	-0.9
2,706,311	-				-0.4
2,706,328	-		PP_2369	0.83	+0.3
2,706,328	-		PP_2369	0.83	+0.1
2,706,368	+		PP_2369	0.84	-0.5
2,706,368	+		PP_2369	0.84	+0.1
2,706,400	+				+0.5
2,706,400	+		PP_2369	0.85	-0.6
2,706,524	-		PP_2369	0.88	+0.5
2,706,613	-				-0.1
2,706,668	+				-0.0
2,706,668	+				-1.0
2,706,668	+				-0.2
2,706,669	-				-0.1
2,706,825	+				-0.7
2,706,825	+				-0.3
2,706,826	-				+0.1
2,706,930	+				-0.4
2,706,931	-				-1.0
2,706,950	+				+0.2
2,707,125	-				+0.9
2,707,125	-				-1.0
2,707,304	+		PP_2370	0.46	-0.9
2,707,405	+		PP_2370	0.66	-2.0
2,707,405	+		PP_2370	0.66	+0.1
2,707,406	-		PP_2370	0.66	-2.2
2,707,406	-		PP_2370	0.66	-0.9
2,707,476	-		PP_2370	0.80	+1.5
2,707,557	+				-1.2
2,707,572	+				-1.9
2,707,572	+				-1.3
2,707,573	-				-2.9
2,707,604	-				-2.1
2,707,611	+				-1.0
2,707,611	+				-1.2
2,707,611	+				+0.3
2,707,612	-				-1.1
2,707,640	-				-0.4
2,707,768	-		PP_2371	0.13	-0.8
2,707,768	-		PP_2371	0.13	-2.0
2,707,884	+		PP_2371	0.20	-2.3
2,707,885	-		PP_2371	0.20	-1.7
2,707,885	-		PP_2371	0.20	+0.9
2,707,885	-		PP_2371	0.20	+0.9
2,708,118	+		PP_2371	0.34	+2.5
2,708,118	+		PP_2371	0.34	-2.2
2,708,316	+		PP_2371	0.46	-1.2
2,708,470	-		PP_2371	0.55	-2.6
2,708,470	-		PP_2371	0.55	-1.9