Strain Fitness in Pseudomonas putida KT2440 around PP_1079

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
1,237,262	+		PP_1078	0.24	-0.3
1,237,263	-		PP_1078	0.24	+1.4
1,237,281	+		PP_1078	0.25	-0.9
1,237,281	+		PP_1078	0.25	-0.9
1,237,281	+		PP_1078	0.25	+1.4
1,237,281	+		PP_1078	0.25	-1.1
1,237,281	+		PP_1078	0.25	+1.5
1,237,281	+		PP_1078	0.25	+2.4
1,237,313	-		PP_1078	0.28	+0.4
1,237,313	-		PP_1078	0.28	-0.1
1,237,313	-		PP_1078	0.28	+1.4
1,237,322	+		PP_1078	0.29	-1.4
1,237,387	+		PP_1078	0.35	-0.8
1,237,387	+		PP_1078	0.35	-0.8
1,237,388	-		PP_1078	0.35	-0.3
1,237,436	-		PP_1078	0.39	-2.9
1,237,436	-		PP_1078	0.39	-0.3
1,237,444	+		PP_1078	0.40	+0.1
1,237,837	+		PP_1078	0.75	-2.1
1,237,837	+		PP_1078	0.75	+2.4
1,237,838	-		PP_1078	0.76	+0.8
1,237,838	-		PP_1078	0.76	-1.4
1,237,838	-		PP_1078	0.76	-2.7
1,237,838	-		PP_1078	0.76	-1.1
1,237,838	-		PP_1078	0.76	-1.2
1,237,848	+		PP_1078	0.76	-0.8
1,237,848	+		PP_1078	0.76	-0.4
1,237,849	-				+0.1
1,238,063	-				-1.8
1,238,094	+				-0.8
1,238,094	+				-1.9
1,238,118	+				-0.4
1,238,119	-				-1.1
1,238,129	+				-1.3
1,238,129	+				-0.2
1,238,130	-				-0.6
1,238,469	+		PP_1079	0.40	-2.2
1,238,469	+		PP_1079	0.40	-2.7
1,238,470	-		PP_1079	0.40	-2.3
1,238,470	-		PP_1079	0.40	-2.0
1,238,526	+		PP_1079	0.46	-1.1
1,238,526	+		PP_1079	0.46	-2.1
1,238,526	+		PP_1079	0.46	-3.8
1,238,527	-		PP_1079	0.46	-1.6
1,238,527	-		PP_1079	0.46	+2.4
1,238,527	-		PP_1079	0.46	-0.9
1,238,527	-		PP_1079	0.46	-2.6
1,238,527	-		PP_1079	0.46	+0.1
1,239,033	+				-2.2
1,239,038	+				-0.9
1,239,038	+				-2.4
1,239,039	-				+1.1
1,239,039	-				-1.7
1,239,039	-				-0.5
1,239,039	-				+0.3
1,239,125	-				+0.5
1,239,139	+				-2.2
1,239,140	-				-1.5
1,239,140	-				-0.0
1,239,140	-				+0.4
1,239,140	-				-0.7
1,239,140	-				+0.5
1,239,142	+				-1.5
1,239,144	+				-0.4
1,239,144	+				-0.5
1,239,145	-				+1.1
1,239,145	-				+0.2
1,239,149	-				+0.8
1,239,216	-				-0.2
1,239,239	+				+0.1
1,239,239	+				-0.7
1,239,246	+				+0.8
1,239,247	-				+1.2
1,239,258	+				-1.4
1,239,259	-				+0.3
1,239,259	-				-1.0
1,239,259	-				-0.0
1,239,259	-				+0.9
1,239,364	+				-0.5
1,239,365	-				+0.7
1,239,365	-				-1.7
1,239,636	+		PP_1080	0.11	+1.7
1,239,636	+		PP_1080	0.11	-1.0
1,239,636	+		PP_1080	0.11	-0.1
1,239,721	+		PP_1080	0.15	+0.6
1,239,721	+		PP_1080	0.15	+0.1
1,239,721	+		PP_1080	0.15	-1.4
1,239,722	-		PP_1080	0.15	-0.3
1,239,722	-		PP_1080	0.15	+0.1
1,239,772	+		PP_1080	0.18	+2.4
1,239,779	+		PP_1080	0.18	-0.1
1,239,780	-		PP_1080	0.18	+0.8
1,239,859	+		PP_1080	0.22	+0.8
1,239,859	+		PP_1080	0.22	-0.1
1,239,859	+		PP_1080	0.22	-0.5
1,239,859	+		PP_1080	0.22	+0.1
1,239,860	-		PP_1080	0.22	+0.2
1,239,860	-		PP_1080	0.22	+0.1
1,239,860	-		PP_1080	0.22	-0.4
1,239,860	-		PP_1080	0.22	-0.3
1,239,860	-		PP_1080	0.22	+1.4