Strain Fitness in Pseudomonas putida KT2440 around PP_0908

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
1,048,781	+		PP_0907	0.33	+0.6
1,048,931	+		PP_0907	0.45	+0.6
1,048,931	+		PP_0907	0.45	+2.4
1,048,932	-		PP_0907	0.45	-0.8
1,048,932	-		PP_0907	0.45	-1.0
1,048,935	+		PP_0907	0.46	+0.1
1,048,936	-		PP_0907	0.46	-0.1
1,048,936	-		PP_0907	0.46	+0.4
1,048,936	-		PP_0907	0.46	-0.2
1,048,986	+		PP_0907	0.50	-0.5
1,048,986	+		PP_0907	0.50	-1.4
1,049,065	+		PP_0907	0.56	+1.2
1,049,536	+				+1.1
1,049,536	+				+1.1
1,049,536	+				-0.2
1,049,537	-				-0.6
1,049,537	-				-0.3
1,049,537	-				+0.5
1,049,573	+				-0.0
1,049,573	+				+0.2
1,049,573	+				-0.2
1,049,574	-				+0.0
1,049,616	+				-1.1
1,049,616	+				-0.1
1,049,616	+				-0.6
1,049,616	+				-1.5
1,049,617	-				-1.7
1,049,617	-				+0.4
1,049,617	-				+0.0
1,049,617	-				-0.9
1,049,617	-				+0.6
1,049,673	+				-2.2
1,049,685	+				+0.4
1,049,698	+				-0.4
1,049,698	+				-1.0
1,049,698	+				-0.3
1,049,698	+				-0.6
1,049,698	+				+0.7
1,049,698	+				-0.8
1,049,699	-				+0.3
1,049,699	-				-0.0
1,049,720	+				+0.3
1,049,720	+				-0.0
1,050,030	-		PP_0908	0.25	-2.8
1,050,030	-		PP_0908	0.25	-0.9
1,050,030	-		PP_0908	0.25	-1.9
1,050,030	-		PP_0908	0.25	-1.4
1,050,306	+		PP_0908	0.50	+1.4
1,050,403	+		PP_0908	0.59	-2.6
1,050,403	+		PP_0908	0.59	-0.6
1,050,404	-		PP_0908	0.59	-0.9
1,050,404	-		PP_0908	0.59	-2.5
1,050,479	+		PP_0908	0.66	-2.5
1,050,479	+		PP_0908	0.66	+0.4
1,050,480	-		PP_0908	0.66	+0.1
1,050,518	+		PP_0908	0.69	+0.8
1,050,518	+		PP_0908	0.69	+1.4
1,050,519	-		PP_0908	0.70	-1.1
1,050,585	-		PP_0908	0.76	-1.8
1,050,690	+		PP_0908	0.85	+0.4
1,050,709	+		PP_0908	0.87	+0.8
1,050,716	+		PP_0908	0.88	-0.9
1,050,716	+		PP_0908	0.88	-0.2
1,050,716	+		PP_0908	0.88	-1.1
1,050,716	+		PP_0908	0.88	-0.4
1,050,717	-		PP_0908	0.88	-2.2
1,050,717	-		PP_0908	0.88	+0.8
1,050,817	+				-0.2
1,050,818	-				-0.1
1,050,950	-				-1.8
1,051,038	-		PP_0909	0.17	+0.0
1,051,038	-		PP_0909	0.17	-0.9
1,051,319	-		PP_0909	0.44	+2.4
1,051,319	-		PP_0909	0.44	-2.9
1,051,492	+		PP_0909	0.60	-0.4
1,051,492	+		PP_0909	0.60	+0.0
1,051,492	+		PP_0909	0.60	+0.8
1,051,493	-		PP_0909	0.60	-1.1
1,051,493	-		PP_0909	0.60	+2.4
1,051,498	+		PP_0909	0.60	-2.4
1,051,515	+		PP_0909	0.62	-2.8
1,051,515	+		PP_0909	0.62	-1.5
1,051,515	+		PP_0909	0.62	-0.3
1,051,516	-		PP_0909	0.62	-0.1
1,051,516	-				+1.4
1,051,516	-		PP_0909	0.62	-1.2
1,051,522	-		PP_0909	0.63	+0.4
1,051,623	+		PP_0909	0.72	-0.6
1,051,624	-		PP_0909	0.72	+0.1
1,051,747	+		PP_0909	0.84	-0.7
1,051,747	+		PP_0909	0.84	+0.5
1,051,747	+		PP_0909	0.84	-0.2
1,051,748	-		PP_0909	0.84	-2.6
1,051,798	+		PP_0909	0.89	+2.4
1,051,798	+		PP_0909	0.89	-0.5
1,051,798	+		PP_0909	0.89	-1.9
1,051,798	+		PP_0909	0.89	-0.4
1,051,799	-		PP_0909	0.89	-0.8
1,051,802	+		PP_0909	0.89	-1.3
1,051,803	-		PP_0909	0.89	+1.0