Strain Fitness in Pseudomonas putida KT2440 around PP_0714

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0713 and PP_0714 are separated by 40 nucleotidesPP_0714 and PP_0715 are separated by 3 nucleotides PP_0713: PP_0713 - Kef-type potassium/proton antiporter, CPA2 family, at 828,389 to 829,585 _0713 PP_0714: PP_0714 - Transporter, PerM family, at 829,626 to 830,723 _0714 PP_0715: PP_0715 - Outer membrane efflux protein, at 830,727 to 832,241 _0715 Position (kb) 829 830 831Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 828.652 kb on - strand, within PP_0713at 828.795 kb on + strand, within PP_0713at 828.796 kb on - strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.230 kb on + strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.325 kb on + strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.461 kb on + strand, within PP_0713at 829.461 kb on + strand, within PP_0713at 829.462 kb on - strand, within PP_0713at 829.786 kb on - strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.884 kb on - strand, within PP_0714at 829.884 kb on - strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 830.054 kb on - strand, within PP_0714at 830.054 kb on - strand, within PP_0714at 830.347 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.496 kb on + strand, within PP_0714at 830.496 kb on + strand, within PP_0714at 830.497 kb on - strand, within PP_0714at 830.497 kb on - strand, within PP_0714at 830.564 kb on - strand, within PP_0714at 830.564 kb on - strand, within PP_0714at 830.578 kb on + strand, within PP_0714at 830.593 kb on + strand, within PP_0714at 830.593 kb on + strand, within PP_0714at 830.593 kb on + strand, within PP_0714at 830.593 kb on + strand, within PP_0714at 830.593 kb on + strand, within PP_0714at 830.594 kb on - strand, within PP_0714at 830.594 kb on - strand, within PP_0714at 830.594 kb on - strand, within PP_0714at 830.594 kb on - strand, within PP_0714at 830.631 kb on - strandat 830.641 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.658 kb on + strandat 830.659 kb on - strandat 830.743 kb on - strandat 830.743 kb on - strandat 831.060 kb on + strand, within PP_0715at 831.083 kb on + strand, within PP_0715at 831.219 kb on + strand, within PP_0715at 831.219 kb on + strand, within PP_0715at 831.219 kb on + strand, within PP_0715at 831.219 kb on + strand, within PP_0715at 831.220 kb on - strand, within PP_0715at 831.220 kb on - strand, within PP_0715at 831.264 kb on + strand, within PP_0715at 831.264 kb on + strand, within PP_0715at 831.265 kb on - strand, within PP_0715at 831.265 kb on - strand, within PP_0715at 831.408 kb on + strand, within PP_0715at 831.408 kb on + strand, within PP_0715at 831.409 kb on - strand, within PP_0715at 831.409 kb on - strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.469 kb on + strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.470 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715at 831.569 kb on - strand, within PP_0715

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Per-strain Table

Position Strand Gene LocusTag Fraction 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
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828,652 - PP_0713 0.22 -0.1
828,795 + PP_0713 0.34 -0.1
828,796 - PP_0713 0.34 -1.4
828,992 + PP_0713 0.50 +2.4
828,992 + PP_0713 0.50 +0.1
829,008 + PP_0713 0.52 -0.4
829,008 + PP_0713 0.52 +0.5
829,230 + PP_0713 0.70 -1.4
829,231 - PP_0713 0.70 -0.4
829,231 - PP_0713 0.70 -0.5
829,231 - PP_0713 0.70 -0.3
829,234 + PP_0713 0.71 -0.1
829,234 + PP_0713 0.71 +0.6
829,234 + PP_0713 0.71 +0.7
829,235 - PP_0713 0.71 -0.5
829,235 - PP_0713 0.71 +1.2
829,325 + PP_0713 0.78 -1.3
829,326 - PP_0713 0.78 -0.7
829,326 - PP_0713 0.78 -0.2
829,326 - PP_0713 0.78 +0.3
829,461 + PP_0713 0.90 -1.5
829,461 + PP_0713 0.90 -0.2
829,462 - PP_0713 0.90 -0.7
829,786 - PP_0714 0.15 +2.4
829,883 + PP_0714 0.23 +2.4
829,883 + PP_0714 0.23 -0.3
829,883 + PP_0714 0.23 +1.5
829,884 - PP_0714 0.23 +0.8
829,884 - PP_0714 0.23 +1.3
829,887 + PP_0714 0.24 -0.1
829,887 + PP_0714 0.24 +0.6
829,887 + PP_0714 0.24 +0.4
829,888 - PP_0714 0.24 +0.0
829,888 - PP_0714 0.24 -1.3
829,888 - PP_0714 0.24 +1.2
830,054 - PP_0714 0.39 -1.2
830,054 - PP_0714 0.39 +1.4
830,347 + PP_0714 0.66 +0.6
830,445 + PP_0714 0.75 -0.6
830,445 + PP_0714 0.75 +3.4
830,445 + PP_0714 0.75 +1.2
830,445 + PP_0714 0.75 -0.3
830,445 + PP_0714 0.75 +0.4
830,445 + PP_0714 0.75 +0.1
830,445 + PP_0714 0.75 +0.1
830,445 + PP_0714 0.75 +0.5
830,445 + PP_0714 0.75 +4.4
830,445 + PP_0714 0.75 +0.0
830,446 - PP_0714 0.75 +0.5
830,446 - PP_0714 0.75 +0.1
830,446 - PP_0714 0.75 +0.4
830,496 + PP_0714 0.79 +1.0
830,496 + PP_0714 0.79 -0.3
830,497 - PP_0714 0.79 -0.2
830,497 - PP_0714 0.79 +0.6
830,564 - PP_0714 0.85 +0.4
830,564 - PP_0714 0.85 +3.0
830,578 + PP_0714 0.87 -1.5
830,593 + PP_0714 0.88 +0.9
830,593 + PP_0714 0.88 +0.9
830,593 + PP_0714 0.88 -0.2
830,593 + PP_0714 0.88 +0.5
830,593 + PP_0714 0.88 +0.6
830,594 - PP_0714 0.88 +0.7
830,594 - PP_0714 0.88 -0.8
830,594 - PP_0714 0.88 -0.0
830,594 - PP_0714 0.88 -0.8
830,631 - -1.6
830,641 + +0.8
830,658 + -0.4
830,658 + -1.3
830,658 + +0.7
830,658 + +0.8
830,658 + -0.5
830,658 + -1.3
830,658 + -2.4
830,658 + -0.0
830,659 - -0.6
830,743 - -1.6
830,743 - +1.0
831,060 + PP_0715 0.22 -1.2
831,083 + PP_0715 0.23 -0.4
831,219 + PP_0715 0.32 -2.6
831,219 + PP_0715 0.32 +0.6
831,219 + PP_0715 0.32 -0.3
831,219 + PP_0715 0.32 -0.1
831,220 - PP_0715 0.33 -0.2
831,220 - PP_0715 0.33 -1.9
831,264 + PP_0715 0.35 -0.2
831,264 + PP_0715 0.35 +1.7
831,265 - PP_0715 0.36 -1.0
831,265 - PP_0715 0.36 +0.4
831,408 + PP_0715 0.45 -0.6
831,408 + PP_0715 0.45 +0.5
831,409 - PP_0715 0.45 +0.9
831,409 - PP_0715 0.45 +0.8
831,469 + PP_0715 0.49 +0.8
831,469 + PP_0715 0.49 +0.7
831,469 + PP_0715 0.49 -1.1
831,469 + PP_0715 0.49 -1.2
831,469 + PP_0715 0.49 -0.4
831,469 + PP_0715 0.49 +0.4
831,470 - PP_0715 0.49 +0.1
831,470 - PP_0715 0.49 -0.9
831,470 - PP_0715 0.49 -0.5
831,569 - PP_0715 0.56 +0.8
831,569 - PP_0715 0.56 -0.2
831,569 - PP_0715 0.56 +0.0
831,569 - PP_0715 0.56 -0.6
831,569 - PP_0715 0.56 +0.5
831,569 - PP_0715 0.56 -0.4

Or see this region's nucleotide sequence