Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3556 and Atu8033 are separated by 13 nucleotides Atu8033 and Atu3557 are separated by 132 nucleotides
Atu3556: Atu3556 - exopolysaccharide polymerization/transport protein, at 606,898 to 609,147
Atu3556
Atu8033: Atu8033 - hypothetical protein, at 609,161 to 609,817
Atu8033
Atu3557: Atu3557 - hypothetical protein, at 609,950 to 611,419
Atu3557
Position (kb) 609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 608.244 kb on + strand, within Atu3556 at 608.244 kb on + strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.252 kb on - strand, within Atu3556 at 608.383 kb on - strand, within Atu3556 at 608.383 kb on - strand, within Atu3556 at 608.393 kb on - strand, within Atu3556 at 608.440 kb on - strand, within Atu3556 at 608.440 kb on - strand, within Atu3556 at 608.467 kb on + strand, within Atu3556 at 608.495 kb on + strand, within Atu3556 at 608.503 kb on - strand, within Atu3556 at 608.557 kb on + strand, within Atu3556 at 608.646 kb on - strand, within Atu3556 at 608.646 kb on - strand, within Atu3556 at 608.653 kb on + strand, within Atu3556 at 608.754 kb on - strand, within Atu3556 at 608.862 kb on + strand, within Atu3556 at 608.917 kb on + strand, within Atu3556 at 608.973 kb on + strand at 608.995 kb on + strand at 608.997 kb on + strand at 609.003 kb on - strand at 609.005 kb on - strand at 609.142 kb on + strand at 609.202 kb on - strand at 609.228 kb on - strand, within Atu8033 at 609.348 kb on - strand, within Atu8033 at 609.453 kb on + strand, within Atu8033 at 609.545 kb on + strand, within Atu8033 at 609.552 kb on - strand, within Atu8033 at 609.674 kb on + strand, within Atu8033 at 609.721 kb on - strand, within Atu8033 at 609.841 kb on - strand at 609.875 kb on - strand at 609.915 kb on + strand at 609.972 kb on + strand at 609.994 kb on - strand at 610.021 kb on + strand at 610.026 kb on - strand at 610.111 kb on + strand, within Atu3557 at 610.119 kb on - strand, within Atu3557 at 610.119 kb on - strand, within Atu3557 at 610.168 kb on + strand, within Atu3557 at 610.191 kb on - strand, within Atu3557 at 610.191 kb on - strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.319 kb on + strand, within Atu3557 at 610.426 kb on + strand, within Atu3557 at 610.434 kb on - strand, within Atu3557 at 610.504 kb on - strand, within Atu3557 at 610.527 kb on - strand, within Atu3557 at 610.530 kb on - strand, within Atu3557 at 610.538 kb on - strand, within Atu3557 at 610.545 kb on + strand, within Atu3557 at 610.554 kb on + strand, within Atu3557 at 610.562 kb on - strand, within Atu3557 at 610.564 kb on + strand, within Atu3557 at 610.584 kb on - strand, within Atu3557 at 610.609 kb on + strand, within Atu3557
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 608,244 + Atu3556 0.60 -0.7 608,244 + Atu3556 0.60 -0.9 608,252 - Atu3556 0.60 -0.8 608,252 - Atu3556 0.60 +0.1 608,252 - Atu3556 0.60 +0.1 608,383 - Atu3556 0.66 -0.1 608,383 - Atu3556 0.66 +0.3 608,393 - Atu3556 0.66 -0.1 608,440 - Atu3556 0.69 +0.4 608,440 - Atu3556 0.69 +1.3 608,467 + Atu3556 0.70 -0.1 608,495 + Atu3556 0.71 -0.2 608,503 - Atu3556 0.71 -0.5 608,557 + Atu3556 0.74 +0.5 608,646 - Atu3556 0.78 +0.2 608,646 - Atu3556 0.78 +2.0 608,653 + Atu3556 0.78 -0.0 608,754 - Atu3556 0.82 +1.6 608,862 + Atu3556 0.87 +0.4 608,917 + Atu3556 0.90 -2.3 608,973 + +0.5 608,995 + -0.1 608,997 + -0.1 609,003 - -0.6 609,005 - -1.6 609,142 + -1.9 609,202 - -0.6 609,228 - Atu8033 0.10 +1.0 609,348 - Atu8033 0.28 +2.7 609,453 + Atu8033 0.44 +1.2 609,545 + Atu8033 0.58 -0.0 609,552 - Atu8033 0.60 +0.1 609,674 + Atu8033 0.78 -3.0 609,721 - Atu8033 0.85 +0.5 609,841 - -0.3 609,875 - -0.7 609,915 + +0.0 609,972 + -0.2 609,994 - +0.6 610,021 + +0.2 610,026 - +1.1 610,111 + Atu3557 0.11 +0.8 610,119 - Atu3557 0.11 +0.5 610,119 - Atu3557 0.11 -2.3 610,168 + Atu3557 0.15 -1.6 610,191 - Atu3557 0.16 +0.2 610,191 - Atu3557 0.16 -0.3 610,319 + Atu3557 0.25 -0.9 610,319 + Atu3557 0.25 +0.4 610,319 + Atu3557 0.25 +0.3 610,319 + Atu3557 0.25 -0.2 610,319 + Atu3557 0.25 +2.2 610,426 + Atu3557 0.32 -1.2 610,434 - Atu3557 0.33 -1.0 610,504 - Atu3557 0.38 -0.1 610,527 - Atu3557 0.39 +2.4 610,530 - Atu3557 0.39 -0.2 610,538 - Atu3557 0.40 -0.1 610,545 + Atu3557 0.40 -0.5 610,554 + Atu3557 0.41 +0.6 610,562 - Atu3557 0.42 -0.6 610,564 + Atu3557 0.42 +0.8 610,584 - Atu3557 0.43 +1.2 610,609 + Atu3557 0.45 -0.6
Or see this region's nucleotide sequence