Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6145 and Atu6146 overlap by 1 nucleotides Atu6146 and Atu6147 are separated by 20 nucleotides Atu6147 and Atu6148 overlap by 246 nucleotides Atu6148 and Atu6149 are separated by 162 nucleotides
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739
Atu6146
Atu6147: Atu6147 - conserved hypothetical protein, at 165,760 to 166,743
Atu6147
Atu6148: Atu6148 - transposase, at 166,498 to 167,382
Atu6148
Atu6149: Atu6149 - hypothetical protein, at 167,545 to 167,880
Atu6149
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 164.775 kb on + strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.788 kb on - strand, within Atu6145 at 164.891 kb on + strand, within Atu6145 at 164.899 kb on - strand, within Atu6145 at 164.906 kb on + strand, within Atu6145 at 164.932 kb on - strand, within Atu6145 at 164.986 kb on + strand, within Atu6145 at 164.994 kb on - strand, within Atu6145 at 165.056 kb on + strand, within Atu6145 at 165.062 kb on - strand, within Atu6145 at 165.085 kb on - strand, within Atu6145 at 165.155 kb on + strand, within Atu6145 at 165.159 kb on - strand, within Atu6145 at 165.163 kb on - strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.183 kb on - strand, within Atu6145 at 165.187 kb on - strand, within Atu6145 at 165.221 kb on - strand at 165.242 kb on + strand at 165.291 kb on + strand at 165.299 kb on - strand at 165.299 kb on - strand at 165.322 kb on + strand at 165.330 kb on - strand, within Atu6146 at 165.332 kb on + strand, within Atu6146 at 165.340 kb on - strand, within Atu6146 at 165.366 kb on + strand, within Atu6146 at 165.423 kb on + strand, within Atu6146 at 165.429 kb on + strand, within Atu6146 at 165.439 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.534 kb on - strand, within Atu6146 at 165.591 kb on + strand, within Atu6146 at 165.594 kb on - strand, within Atu6146 at 165.600 kb on + strand, within Atu6146 at 165.613 kb on - strand, within Atu6146 at 165.686 kb on - strand, within Atu6146 at 165.754 kb on - strand at 165.777 kb on + strand at 165.836 kb on + strand at 165.874 kb on - strand, within Atu6147 at 165.975 kb on - strand, within Atu6147 at 166.050 kb on - strand, within Atu6147 at 166.078 kb on - strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.106 kb on - strand, within Atu6147 at 166.140 kb on - strand, within Atu6147 at 166.142 kb on + strand, within Atu6147 at 166.150 kb on - strand, within Atu6147 at 166.203 kb on + strand, within Atu6147 at 166.211 kb on - strand, within Atu6147 at 166.250 kb on + strand, within Atu6147 at 166.258 kb on - strand, within Atu6147 at 166.282 kb on + strand, within Atu6147 at 166.282 kb on + strand, within Atu6147 at 166.315 kb on + strand, within Atu6147 at 166.337 kb on + strand, within Atu6147 at 166.380 kb on - strand, within Atu6147 at 166.412 kb on + strand, within Atu6147 at 166.532 kb on + strand at 166.564 kb on + strand at 166.592 kb on - strand at 166.607 kb on - strand at 166.613 kb on + strand at 166.614 kb on + strand at 166.634 kb on + strand at 166.642 kb on - strand at 166.657 kb on + strand at 166.662 kb on + strand at 166.664 kb on - strand at 166.670 kb on - strand at 166.670 kb on - strand at 166.692 kb on - strand at 166.741 kb on - strand at 166.746 kb on - strand, within Atu6148 at 166.793 kb on + strand, within Atu6148 at 166.862 kb on - strand, within Atu6148 at 166.871 kb on - strand, within Atu6148 at 166.878 kb on - strand, within Atu6148 at 166.902 kb on + strand, within Atu6148 at 166.902 kb on + strand, within Atu6148 at 166.910 kb on - strand, within Atu6148 at 166.915 kb on + strand, within Atu6148 at 167.022 kb on + strand, within Atu6148 at 167.030 kb on - strand, within Atu6148 at 167.030 kb on - strand, within Atu6148 at 167.058 kb on + strand, within Atu6148 at 167.058 kb on + strand, within Atu6148 at 167.110 kb on + strand, within Atu6148 at 167.128 kb on - strand, within Atu6148 at 167.135 kb on + strand, within Atu6148 at 167.143 kb on - strand, within Atu6148 at 167.169 kb on + strand, within Atu6148 at 167.179 kb on - strand, within Atu6148 at 167.205 kb on + strand, within Atu6148 at 167.211 kb on - strand, within Atu6148 at 167.251 kb on + strand, within Atu6148 at 167.254 kb on - strand, within Atu6148 at 167.257 kb on - strand, within Atu6148 at 167.282 kb on - strand, within Atu6148 at 167.284 kb on + strand, within Atu6148 at 167.284 kb on + strand, within Atu6148 at 167.287 kb on - strand, within Atu6148 at 167.292 kb on - strand, within Atu6148 at 167.292 kb on - strand, within Atu6148 at 167.296 kb on + strand at 167.304 kb on - strand at 167.306 kb on + strand at 167.439 kb on + strand at 167.471 kb on + strand at 167.515 kb on + strand at 167.556 kb on + strand at 167.563 kb on - strand at 167.631 kb on + strand, within Atu6149 at 167.631 kb on + strand, within Atu6149 at 167.639 kb on - strand, within Atu6149 at 167.639 kb on - strand, within Atu6149 at 167.659 kb on + strand, within Atu6149 at 167.667 kb on - strand, within Atu6149 at 167.667 kb on - strand, within Atu6149 at 167.670 kb on + strand, within Atu6149 at 167.674 kb on + strand, within Atu6149 at 167.674 kb on + strand, within Atu6149 at 167.689 kb on - strand, within Atu6149 at 167.689 kb on - strand, within Atu6149
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 164,775 + Atu6145 0.38 -0.2 164,783 - Atu6145 0.39 -0.0 164,783 - Atu6145 0.39 +0.6 164,788 - Atu6145 0.40 -0.9 164,891 + Atu6145 0.52 -1.6 164,899 - Atu6145 0.53 -1.3 164,906 + Atu6145 0.54 +1.7 164,932 - Atu6145 0.57 +0.1 164,986 + Atu6145 0.64 -0.6 164,994 - Atu6145 0.65 -2.3 165,056 + Atu6145 0.72 -0.3 165,062 - Atu6145 0.73 +0.3 165,085 - Atu6145 0.76 -0.9 165,155 + Atu6145 0.84 -0.3 165,159 - Atu6145 0.85 -1.3 165,163 - Atu6145 0.85 +0.9 165,179 + Atu6145 0.87 -0.1 165,179 + Atu6145 0.87 +0.0 165,183 - Atu6145 0.88 -0.3 165,187 - Atu6145 0.88 +0.3 165,221 - -0.6 165,242 + -1.7 165,291 + -0.6 165,299 - -2.3 165,299 - +0.1 165,322 + -0.7 165,330 - Atu6146 0.11 -1.2 165,332 + Atu6146 0.11 +0.0 165,340 - Atu6146 0.13 -2.1 165,366 + Atu6146 0.19 -1.0 165,423 + Atu6146 0.31 -2.1 165,429 + Atu6146 0.32 -1.9 165,439 - Atu6146 0.34 -0.1 165,449 - Atu6146 0.37 -2.9 165,449 - Atu6146 0.37 +0.2 165,534 - Atu6146 0.55 -0.3 165,591 + Atu6146 0.68 -0.5 165,594 - Atu6146 0.68 -2.6 165,600 + Atu6146 0.69 +1.4 165,613 - Atu6146 0.72 -0.3 165,686 - Atu6146 0.88 +1.0 165,754 - +1.0 165,777 + +0.4 165,836 + -0.3 165,874 - Atu6147 0.12 +0.3 165,975 - Atu6147 0.22 +1.4 166,050 - Atu6147 0.29 -0.3 166,078 - Atu6147 0.32 +0.0 166,098 + Atu6147 0.34 +1.0 166,098 + Atu6147 0.34 +0.6 166,098 + Atu6147 0.34 -1.2 166,106 - Atu6147 0.35 -1.3 166,140 - Atu6147 0.39 +0.7 166,142 + Atu6147 0.39 +0.2 166,150 - Atu6147 0.40 +0.3 166,203 + Atu6147 0.45 -0.0 166,211 - Atu6147 0.46 +0.7 166,250 + Atu6147 0.50 -0.5 166,258 - Atu6147 0.51 -0.3 166,282 + Atu6147 0.53 -1.6 166,282 + Atu6147 0.53 -0.8 166,315 + Atu6147 0.56 +0.6 166,337 + Atu6147 0.59 +5.9 166,380 - Atu6147 0.63 +0.9 166,412 + Atu6147 0.66 -0.2 166,532 + -0.1 166,564 + +1.7 166,592 - -0.2 166,607 - -0.4 166,613 + -0.1 166,614 + -1.3 166,634 + -0.5 166,642 - -2.5 166,657 + -0.9 166,662 + +5.0 166,664 - -0.9 166,670 - -1.1 166,670 - -1.3 166,692 - -1.3 166,741 - -0.6 166,746 - Atu6148 0.28 +0.1 166,793 + Atu6148 0.33 -0.2 166,862 - Atu6148 0.41 -1.0 166,871 - Atu6148 0.42 -0.7 166,878 - Atu6148 0.43 +0.5 166,902 + Atu6148 0.46 +0.1 166,902 + Atu6148 0.46 +0.5 166,910 - Atu6148 0.47 +0.4 166,915 + Atu6148 0.47 -0.1 167,022 + Atu6148 0.59 +0.4 167,030 - Atu6148 0.60 +0.5 167,030 - Atu6148 0.60 -0.6 167,058 + Atu6148 0.63 -0.6 167,058 + Atu6148 0.63 -0.3 167,110 + Atu6148 0.69 -1.4 167,128 - Atu6148 0.71 -0.0 167,135 + Atu6148 0.72 -3.5 167,143 - Atu6148 0.73 -0.1 167,169 + Atu6148 0.76 -0.5 167,179 - Atu6148 0.77 -1.9 167,205 + Atu6148 0.80 +0.7 167,211 - Atu6148 0.81 +0.1 167,251 + Atu6148 0.85 +0.4 167,254 - Atu6148 0.85 +0.7 167,257 - Atu6148 0.86 -0.6 167,282 - Atu6148 0.89 -0.1 167,284 + Atu6148 0.89 -0.3 167,284 + Atu6148 0.89 +0.4 167,287 - Atu6148 0.89 -0.0 167,292 - Atu6148 0.90 -0.3 167,292 - Atu6148 0.90 +0.2 167,296 + +1.7 167,304 - +0.1 167,306 + +0.3 167,439 + +2.2 167,471 + -0.3 167,515 + +1.2 167,556 + -1.7 167,563 - -0.7 167,631 + Atu6149 0.26 +0.4 167,631 + Atu6149 0.26 -0.3 167,639 - Atu6149 0.28 +0.7 167,639 - Atu6149 0.28 +1.0 167,659 + Atu6149 0.34 -0.3 167,667 - Atu6149 0.36 +0.1 167,667 - Atu6149 0.36 +0.3 167,670 + Atu6149 0.37 +0.3 167,674 + Atu6149 0.38 +0.0 167,674 + Atu6149 0.38 -0.9 167,689 - Atu6149 0.43 +0.9 167,689 - Atu6149 0.43 -0.9
Or see this region's nucleotide sequence