Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6049 and Atu6050 are separated by 233 nucleotides Atu6050 and Atu6051 are separated by 8 nucleotides Atu6051 and Atu6052 are separated by 167 nucleotides
Atu6049: Atu6049 - hypothetical protein, at 61,460 to 62,647
Atu6049
Atu6050: Atu6050 - conserved hypothetical protein, at 62,881 to 63,597
Atu6050
Atu6051: Atu6051 - conserved hypothetical protein, at 63,606 to 64,190
Atu6051
Atu6052: Atu6052 - conserved hypothetical protein, at 64,358 to 65,185
Atu6052
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 61.933 kb on + strand, within Atu6049 at 61.933 kb on + strand, within Atu6049 at 61.964 kb on + strand, within Atu6049 at 61.976 kb on + strand, within Atu6049 at 61.978 kb on + strand, within Atu6049 at 61.978 kb on + strand, within Atu6049 at 62.030 kb on + strand, within Atu6049 at 62.038 kb on - strand, within Atu6049 at 62.066 kb on + strand, within Atu6049 at 62.066 kb on + strand, within Atu6049 at 62.084 kb on - strand, within Atu6049 at 62.084 kb on - strand, within Atu6049 at 62.166 kb on + strand, within Atu6049 at 62.273 kb on - strand, within Atu6049 at 62.278 kb on + strand, within Atu6049 at 62.286 kb on - strand, within Atu6049 at 62.291 kb on - strand, within Atu6049 at 62.331 kb on + strand, within Atu6049 at 62.331 kb on + strand, within Atu6049 at 62.331 kb on + strand, within Atu6049 at 62.331 kb on + strand, within Atu6049 at 62.339 kb on - strand, within Atu6049 at 62.339 kb on - strand, within Atu6049 at 62.339 kb on - strand, within Atu6049 at 62.339 kb on - strand, within Atu6049 at 62.350 kb on + strand, within Atu6049 at 62.409 kb on + strand, within Atu6049 at 62.518 kb on + strand, within Atu6049 at 62.518 kb on + strand, within Atu6049 at 62.518 kb on + strand, within Atu6049 at 62.518 kb on + strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.526 kb on - strand, within Atu6049 at 62.555 kb on - strand at 62.563 kb on + strand at 62.571 kb on - strand at 62.661 kb on + strand at 62.734 kb on + strand at 62.734 kb on - strand at 62.787 kb on + strand at 62.793 kb on - strand at 62.795 kb on - strand at 62.800 kb on - strand at 62.919 kb on + strand at 62.927 kb on - strand at 62.983 kb on - strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.015 kb on + strand, within Atu6050 at 63.023 kb on - strand, within Atu6050 at 63.023 kb on - strand, within Atu6050 at 63.106 kb on + strand, within Atu6050 at 63.167 kb on - strand, within Atu6050 at 63.200 kb on + strand, within Atu6050 at 63.207 kb on - strand, within Atu6050 at 63.218 kb on + strand, within Atu6050 at 63.242 kb on - strand, within Atu6050 at 63.330 kb on + strand, within Atu6050 at 63.337 kb on + strand, within Atu6050 at 63.357 kb on + strand, within Atu6050 at 63.364 kb on + strand, within Atu6050 at 63.367 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.378 kb on + strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.386 kb on - strand, within Atu6050 at 63.429 kb on - strand, within Atu6050 at 63.446 kb on + strand, within Atu6050 at 63.523 kb on - strand, within Atu6050 at 63.573 kb on - strand at 63.625 kb on + strand at 63.635 kb on - strand at 63.648 kb on - strand at 63.678 kb on + strand, within Atu6051 at 63.679 kb on - strand, within Atu6051 at 63.758 kb on + strand, within Atu6051 at 63.758 kb on + strand, within Atu6051 at 63.758 kb on + strand, within Atu6051 at 63.766 kb on - strand, within Atu6051 at 63.766 kb on - strand, within Atu6051 at 63.779 kb on - strand, within Atu6051 at 63.856 kb on - strand, within Atu6051 at 63.878 kb on + strand, within Atu6051 at 63.886 kb on - strand, within Atu6051 at 63.935 kb on - strand, within Atu6051 at 63.982 kb on + strand, within Atu6051 at 63.990 kb on - strand, within Atu6051 at 63.990 kb on - strand, within Atu6051 at 64.018 kb on - strand, within Atu6051 at 64.018 kb on - strand, within Atu6051 at 64.031 kb on + strand, within Atu6051 at 64.039 kb on - strand, within Atu6051 at 64.039 kb on - strand, within Atu6051 at 64.071 kb on + strand, within Atu6051 at 64.071 kb on - strand, within Atu6051 at 64.082 kb on + strand, within Atu6051 at 64.090 kb on - strand, within Atu6051 at 64.124 kb on - strand, within Atu6051 at 64.167 kb on + strand at 64.172 kb on + strand at 64.177 kb on + strand at 64.180 kb on - strand at 64.203 kb on - strand at 64.317 kb on + strand at 64.399 kb on + strand at 64.412 kb on - strand at 64.422 kb on + strand at 64.422 kb on + strand at 64.430 kb on - strand at 64.430 kb on - strand at 64.432 kb on + strand at 64.449 kb on - strand, within Atu6052 at 64.477 kb on - strand, within Atu6052 at 64.480 kb on + strand, within Atu6052 at 64.482 kb on + strand, within Atu6052 at 64.482 kb on + strand, within Atu6052 at 64.482 kb on + strand, within Atu6052 at 64.490 kb on - strand, within Atu6052 at 64.490 kb on - strand, within Atu6052 at 64.493 kb on + strand, within Atu6052 at 64.524 kb on + strand, within Atu6052 at 64.563 kb on - strand, within Atu6052
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 61,933 + Atu6049 0.40 -0.3 61,933 + Atu6049 0.40 -1.5 61,964 + Atu6049 0.42 -0.1 61,976 + Atu6049 0.43 -1.3 61,978 + Atu6049 0.44 +0.7 61,978 + Atu6049 0.44 -0.1 62,030 + Atu6049 0.48 -1.5 62,038 - Atu6049 0.49 -0.3 62,066 + Atu6049 0.51 +0.1 62,066 + Atu6049 0.51 -1.3 62,084 - Atu6049 0.53 +1.1 62,084 - Atu6049 0.53 -0.3 62,166 + Atu6049 0.59 -0.5 62,273 - Atu6049 0.68 -0.1 62,278 + Atu6049 0.69 -0.2 62,286 - Atu6049 0.70 +0.1 62,291 - Atu6049 0.70 -0.2 62,331 + Atu6049 0.73 -0.1 62,331 + Atu6049 0.73 +0.5 62,331 + Atu6049 0.73 +1.3 62,331 + Atu6049 0.73 -0.1 62,339 - Atu6049 0.74 -0.3 62,339 - Atu6049 0.74 +0.7 62,339 - Atu6049 0.74 +3.0 62,339 - Atu6049 0.74 +0.9 62,350 + Atu6049 0.75 -0.2 62,409 + Atu6049 0.80 -0.7 62,518 + Atu6049 0.89 -2.7 62,518 + Atu6049 0.89 -0.0 62,518 + Atu6049 0.89 -0.1 62,518 + Atu6049 0.89 +0.7 62,526 - Atu6049 0.90 -1.8 62,526 - Atu6049 0.90 -0.5 62,526 - Atu6049 0.90 -0.5 62,526 - Atu6049 0.90 +1.9 62,526 - Atu6049 0.90 -0.4 62,526 - Atu6049 0.90 +0.7 62,526 - Atu6049 0.90 -2.3 62,526 - Atu6049 0.90 +0.4 62,555 - -1.4 62,563 + +0.4 62,571 - -1.7 62,661 + +0.8 62,734 + +1.0 62,734 - +1.3 62,787 + +0.3 62,793 - -0.9 62,795 - +1.2 62,800 - -1.1 62,919 + -2.1 62,927 - +0.1 62,983 - Atu6050 0.14 -0.6 63,015 + Atu6050 0.19 +1.0 63,015 + Atu6050 0.19 +0.5 63,015 + Atu6050 0.19 -0.4 63,015 + Atu6050 0.19 -1.3 63,015 + Atu6050 0.19 -0.9 63,015 + Atu6050 0.19 -0.5 63,015 + Atu6050 0.19 -0.1 63,023 - Atu6050 0.20 +6.9 63,023 - Atu6050 0.20 +0.4 63,106 + Atu6050 0.31 -2.9 63,167 - Atu6050 0.40 +0.1 63,200 + Atu6050 0.44 -0.6 63,207 - Atu6050 0.45 -1.9 63,218 + Atu6050 0.47 +0.6 63,242 - Atu6050 0.50 +0.7 63,330 + Atu6050 0.63 -0.5 63,337 + Atu6050 0.64 +0.7 63,357 + Atu6050 0.66 -1.9 63,364 + Atu6050 0.67 -0.1 63,367 + Atu6050 0.68 +1.4 63,378 + Atu6050 0.69 +0.5 63,378 + Atu6050 0.69 -1.6 63,378 + Atu6050 0.69 -0.8 63,378 + Atu6050 0.69 -1.2 63,378 + Atu6050 0.69 -0.5 63,378 + Atu6050 0.69 +1.3 63,378 + Atu6050 0.69 -0.3 63,378 + Atu6050 0.69 +2.8 63,378 + Atu6050 0.69 +0.3 63,378 + Atu6050 0.69 +1.2 63,378 + Atu6050 0.69 -0.5 63,378 + Atu6050 0.69 -1.3 63,378 + Atu6050 0.69 +1.1 63,386 - Atu6050 0.70 -0.3 63,386 - Atu6050 0.70 -1.6 63,386 - Atu6050 0.70 +0.1 63,386 - Atu6050 0.70 -1.9 63,386 - Atu6050 0.70 -1.0 63,386 - Atu6050 0.70 -1.6 63,386 - Atu6050 0.70 -1.3 63,386 - Atu6050 0.70 -2.1 63,429 - Atu6050 0.76 -0.9 63,446 + Atu6050 0.79 -1.1 63,523 - Atu6050 0.90 -0.1 63,573 - +1.0 63,625 + -2.1 63,635 - +0.4 63,648 - -2.1 63,678 + Atu6051 0.12 +2.5 63,679 - Atu6051 0.12 -0.3 63,758 + Atu6051 0.26 +1.0 63,758 + Atu6051 0.26 -1.1 63,758 + Atu6051 0.26 -0.6 63,766 - Atu6051 0.27 -0.9 63,766 - Atu6051 0.27 +0.7 63,779 - Atu6051 0.30 -0.9 63,856 - Atu6051 0.43 +1.4 63,878 + Atu6051 0.46 -0.3 63,886 - Atu6051 0.48 -1.1 63,935 - Atu6051 0.56 -0.0 63,982 + Atu6051 0.64 +0.1 63,990 - Atu6051 0.66 -1.3 63,990 - Atu6051 0.66 +1.5 64,018 - Atu6051 0.70 +0.6 64,018 - Atu6051 0.70 -0.5 64,031 + Atu6051 0.73 -3.0 64,039 - Atu6051 0.74 -1.6 64,039 - Atu6051 0.74 -1.9 64,071 + Atu6051 0.79 -2.1 64,071 - Atu6051 0.79 +0.2 64,082 + Atu6051 0.81 +1.2 64,090 - Atu6051 0.83 +0.5 64,124 - Atu6051 0.89 -0.8 64,167 + -0.5 64,172 + -0.0 64,177 + +0.5 64,180 - +1.3 64,203 - -0.1 64,317 + -0.1 64,399 + +0.6 64,412 - +0.7 64,422 + +0.5 64,422 + -0.7 64,430 - +0.2 64,430 - -3.6 64,432 + +0.5 64,449 - Atu6052 0.11 -0.5 64,477 - Atu6052 0.14 -0.9 64,480 + Atu6052 0.15 +0.8 64,482 + Atu6052 0.15 +1.2 64,482 + Atu6052 0.15 -0.3 64,482 + Atu6052 0.15 +1.7 64,490 - Atu6052 0.16 +0.2 64,490 - Atu6052 0.16 -0.7 64,493 + Atu6052 0.16 +0.5 64,524 + Atu6052 0.20 -0.3 64,563 - Atu6052 0.25 -0.4
Or see this region's nucleotide sequence