Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5002 and Atu5003 are separated by 332 nucleotides Atu5003 and Atu5004 are separated by 44 nucleotides
Atu5002: Atu5002 - replication initiation protein RepC, at 2,606 to 3,820
Atu5002
Atu5003: Atu5003 - fructosyl amino acid oxidase, at 4,153 to 5,280
Atu5003
Atu5004: Atu5004 - deoxyfructose oxidoreductase, at 5,325 to 6,332
Atu5004
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3.781 kb on + strand at 3.823 kb on - strand at 3.823 kb on - strand at 3.830 kb on + strand at 3.883 kb on + strand at 3.922 kb on - strand at 3.959 kb on + strand at 3.967 kb on - strand at 3.967 kb on - strand at 3.994 kb on - strand at 4.047 kb on + strand at 4.079 kb on + strand at 4.085 kb on - strand at 4.112 kb on + strand at 4.125 kb on + strand at 4.245 kb on + strand at 4.245 kb on + strand at 4.253 kb on - strand at 4.336 kb on - strand, within Atu5003 at 4.363 kb on - strand, within Atu5003 at 4.422 kb on + strand, within Atu5003 at 4.463 kb on + strand, within Atu5003 at 4.471 kb on - strand, within Atu5003 at 4.471 kb on - strand, within Atu5003 at 4.471 kb on - strand, within Atu5003 at 4.541 kb on + strand, within Atu5003 at 4.543 kb on + strand, within Atu5003 at 4.549 kb on - strand, within Atu5003 at 4.549 kb on - strand, within Atu5003 at 4.549 kb on - strand, within Atu5003 at 4.551 kb on - strand, within Atu5003 at 4.579 kb on + strand, within Atu5003 at 4.671 kb on + strand, within Atu5003 at 4.671 kb on + strand, within Atu5003 at 4.690 kb on + strand, within Atu5003 at 4.691 kb on + strand, within Atu5003 at 4.691 kb on + strand, within Atu5003 at 4.723 kb on - strand, within Atu5003 at 4.730 kb on + strand, within Atu5003 at 4.738 kb on - strand, within Atu5003 at 4.738 kb on - strand, within Atu5003 at 4.761 kb on - strand, within Atu5003 at 4.818 kb on - strand, within Atu5003 at 4.836 kb on - strand, within Atu5003 at 4.844 kb on + strand, within Atu5003 at 4.844 kb on + strand, within Atu5003 at 4.852 kb on - strand, within Atu5003 at 4.853 kb on - strand, within Atu5003 at 5.002 kb on + strand, within Atu5003 at 5.093 kb on + strand, within Atu5003 at 5.143 kb on + strand, within Atu5003 at 5.185 kb on + strand at 5.323 kb on + strand at 5.330 kb on + strand at 5.377 kb on + strand at 5.421 kb on - strand at 5.432 kb on + strand, within Atu5004 at 5.573 kb on - strand, within Atu5004 at 5.598 kb on - strand, within Atu5004 at 5.646 kb on + strand, within Atu5004 at 5.654 kb on - strand, within Atu5004 at 5.726 kb on + strand, within Atu5004 at 5.730 kb on - strand, within Atu5004 at 5.776 kb on + strand, within Atu5004 at 5.850 kb on - strand, within Atu5004 at 5.884 kb on + strand, within Atu5004 at 5.894 kb on + strand, within Atu5004 at 5.962 kb on - strand, within Atu5004 at 6.055 kb on + strand, within Atu5004 at 6.055 kb on + strand, within Atu5004 at 6.073 kb on + strand, within Atu5004 at 6.073 kb on - strand, within Atu5004 at 6.112 kb on + strand, within Atu5004 at 6.112 kb on + strand, within Atu5004 at 6.112 kb on + strand, within Atu5004 at 6.171 kb on - strand, within Atu5004 at 6.172 kb on - strand, within Atu5004 at 6.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,781 + -2.3 3,823 - +1.1 3,823 - +1.3 3,830 + +0.3 3,883 + +3.4 3,922 - +0.2 3,959 + -0.1 3,967 - +0.2 3,967 - -0.0 3,994 - -0.3 4,047 + -0.3 4,079 + -3.0 4,085 - -1.8 4,112 + +0.7 4,125 + -0.7 4,245 + -0.3 4,245 + -2.3 4,253 - +0.1 4,336 - Atu5003 0.16 -0.3 4,363 - Atu5003 0.19 -1.1 4,422 + Atu5003 0.24 -0.3 4,463 + Atu5003 0.27 -0.3 4,471 - Atu5003 0.28 -0.3 4,471 - Atu5003 0.28 +0.2 4,471 - Atu5003 0.28 -0.2 4,541 + Atu5003 0.34 -1.1 4,543 + Atu5003 0.35 -1.9 4,549 - Atu5003 0.35 -1.7 4,549 - Atu5003 0.35 -0.4 4,549 - Atu5003 0.35 -0.2 4,551 - Atu5003 0.35 -1.4 4,579 + Atu5003 0.38 -0.1 4,671 + Atu5003 0.46 -0.7 4,671 + Atu5003 0.46 +0.9 4,690 + Atu5003 0.48 +1.8 4,691 + Atu5003 0.48 +0.7 4,691 + Atu5003 0.48 -1.7 4,723 - Atu5003 0.51 -1.2 4,730 + Atu5003 0.51 -0.1 4,738 - Atu5003 0.52 -0.4 4,738 - Atu5003 0.52 -1.8 4,761 - Atu5003 0.54 -2.1 4,818 - Atu5003 0.59 +0.3 4,836 - Atu5003 0.61 -0.1 4,844 + Atu5003 0.61 -0.6 4,844 + Atu5003 0.61 -0.5 4,852 - Atu5003 0.62 -1.0 4,853 - Atu5003 0.62 +0.1 5,002 + Atu5003 0.75 -0.8 5,093 + Atu5003 0.83 -0.8 5,143 + Atu5003 0.88 +0.1 5,185 + +0.7 5,323 + -2.5 5,330 + +0.1 5,377 + +0.6 5,421 - +1.1 5,432 + Atu5004 0.11 -0.0 5,573 - Atu5004 0.25 +1.0 5,598 - Atu5004 0.27 -2.7 5,646 + Atu5004 0.32 -0.7 5,654 - Atu5004 0.33 +0.5 5,726 + Atu5004 0.40 -2.7 5,730 - Atu5004 0.40 +0.7 5,776 + Atu5004 0.45 +0.6 5,850 - Atu5004 0.52 -0.5 5,884 + Atu5004 0.55 -0.5 5,894 + Atu5004 0.56 +0.3 5,962 - Atu5004 0.63 -0.4 6,055 + Atu5004 0.72 -0.2 6,055 + Atu5004 0.72 -3.9 6,073 + Atu5004 0.74 -0.7 6,073 - Atu5004 0.74 -0.2 6,112 + Atu5004 0.78 +0.7 6,112 + Atu5004 0.78 -3.0 6,112 + Atu5004 0.78 +3.0 6,171 - Atu5004 0.84 -1.0 6,172 - Atu5004 0.84 +0.6 6,252 + +2.0
Or see this region's nucleotide sequence