Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3856 and Atu3857 are separated by 43 nucleotides Atu3857 and Atu3858 are separated by 45 nucleotides Atu3858 and Atu3859 are separated by 190 nucleotides Atu3859 and Atu3860 are separated by 333 nucleotides
Atu3856: Atu3856 - hypothetical protein, at 946,422 to 946,721
Atu3856
Atu3857: Atu3857 - hypothetical protein, at 946,765 to 947,562
Atu3857
Atu3858: Atu3858 - hypothetical protein, at 947,608 to 947,988
Atu3858
Atu3859: Atu3859 - tRNA-Ser, at 948,179 to 948,268
Atu3859
Atu3860: Atu3860 - hypothetical protein, at 948,602 to 950,845
Atu3860
Position (kb) 947
948 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 946.679 kb on + strand, within Atu3856 at 946.819 kb on - strand at 946.864 kb on + strand, within Atu3857 at 946.874 kb on - strand, within Atu3857 at 946.965 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.967 kb on - strand, within Atu3857 at 946.987 kb on - strand, within Atu3857 at 946.990 kb on + strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 946.998 kb on - strand, within Atu3857 at 947.003 kb on + strand, within Atu3857 at 947.011 kb on - strand, within Atu3857 at 947.016 kb on + strand, within Atu3857 at 947.016 kb on + strand, within Atu3857 at 947.024 kb on - strand, within Atu3857 at 947.068 kb on + strand, within Atu3857 at 947.075 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.080 kb on + strand, within Atu3857 at 947.083 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.088 kb on - strand, within Atu3857 at 947.159 kb on - strand, within Atu3857 at 947.180 kb on + strand, within Atu3857 at 947.196 kb on + strand, within Atu3857 at 947.249 kb on + strand, within Atu3857 at 947.260 kb on + strand, within Atu3857 at 947.278 kb on - strand, within Atu3857 at 947.278 kb on - strand, within Atu3857 at 947.282 kb on - strand, within Atu3857 at 947.375 kb on + strand, within Atu3857 at 947.451 kb on - strand, within Atu3857 at 947.456 kb on - strand, within Atu3857 at 947.554 kb on - strand at 947.619 kb on + strand at 947.619 kb on + strand at 947.621 kb on + strand at 947.621 kb on + strand at 947.629 kb on - strand at 947.639 kb on - strand at 947.649 kb on - strand, within Atu3858 at 947.660 kb on + strand, within Atu3858 at 947.660 kb on + strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.668 kb on - strand, within Atu3858 at 947.672 kb on - strand, within Atu3858 at 947.680 kb on - strand, within Atu3858 at 947.767 kb on - strand, within Atu3858 at 947.774 kb on - strand, within Atu3858 at 947.922 kb on + strand, within Atu3858 at 948.061 kb on + strand at 948.061 kb on + strand at 948.069 kb on - strand at 948.391 kb on - strand at 948.398 kb on + strand at 948.432 kb on + strand at 948.432 kb on + strand at 948.466 kb on + strand at 948.466 kb on + strand at 948.474 kb on - strand at 948.474 kb on - strand at 948.474 kb on - strand at 948.557 kb on + strand at 948.577 kb on - strand at 948.700 kb on + strand at 948.708 kb on - strand at 948.782 kb on + strand at 948.795 kb on + strand at 948.795 kb on + strand at 948.795 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.803 kb on - strand at 948.814 kb on - strand at 948.819 kb on + strand at 948.843 kb on + strand, within Atu3860 at 948.843 kb on + strand, within Atu3860 at 948.850 kb on + strand, within Atu3860 at 948.851 kb on - strand, within Atu3860 at 948.851 kb on - strand, within Atu3860 at 948.858 kb on - strand, within Atu3860 at 948.931 kb on - strand, within Atu3860 at 948.932 kb on - strand, within Atu3860
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 946,679 + Atu3856 0.86 -0.0 946,819 - -0.8 946,864 + Atu3857 0.12 +0.7 946,874 - Atu3857 0.14 -0.9 946,965 - Atu3857 0.25 +0.8 946,967 - Atu3857 0.25 +0.5 946,967 - Atu3857 0.25 +0.8 946,967 - Atu3857 0.25 -0.1 946,987 - Atu3857 0.28 -0.4 946,990 + Atu3857 0.28 -1.1 946,998 - Atu3857 0.29 -1.5 946,998 - Atu3857 0.29 -0.1 946,998 - Atu3857 0.29 +1.4 947,003 + Atu3857 0.30 -1.2 947,011 - Atu3857 0.31 -1.2 947,016 + Atu3857 0.31 +0.7 947,016 + Atu3857 0.31 -1.0 947,024 - Atu3857 0.32 +2.3 947,068 + Atu3857 0.38 -0.6 947,075 + Atu3857 0.39 +0.2 947,080 + Atu3857 0.39 -2.0 947,080 + Atu3857 0.39 -0.3 947,080 + Atu3857 0.39 -0.5 947,083 - Atu3857 0.40 -1.8 947,088 - Atu3857 0.40 -0.4 947,088 - Atu3857 0.40 +0.3 947,088 - Atu3857 0.40 -1.1 947,159 - Atu3857 0.49 +0.1 947,180 + Atu3857 0.52 -0.2 947,196 + Atu3857 0.54 -0.2 947,249 + Atu3857 0.61 +0.5 947,260 + Atu3857 0.62 -2.5 947,278 - Atu3857 0.64 -0.1 947,278 - Atu3857 0.64 +0.1 947,282 - Atu3857 0.65 -0.4 947,375 + Atu3857 0.76 -0.4 947,451 - Atu3857 0.86 +0.5 947,456 - Atu3857 0.87 +1.2 947,554 - +0.1 947,619 + +0.1 947,619 + +0.6 947,621 + -0.6 947,621 + +0.3 947,629 - -0.8 947,639 - +0.5 947,649 - Atu3858 0.11 +0.0 947,660 + Atu3858 0.14 +0.1 947,660 + Atu3858 0.14 +0.2 947,668 - Atu3858 0.16 +1.0 947,668 - Atu3858 0.16 -1.2 947,668 - Atu3858 0.16 +0.6 947,668 - Atu3858 0.16 -0.3 947,668 - Atu3858 0.16 +0.0 947,668 - Atu3858 0.16 -0.7 947,672 - Atu3858 0.17 +3.7 947,680 - Atu3858 0.19 +0.3 947,767 - Atu3858 0.42 +0.1 947,774 - Atu3858 0.44 +0.2 947,922 + Atu3858 0.82 +1.2 948,061 + +0.4 948,061 + -0.7 948,069 - -0.4 948,391 - +0.1 948,398 + +0.5 948,432 + +0.4 948,432 + +2.3 948,466 + -1.5 948,466 + -2.0 948,474 - -1.0 948,474 - +0.5 948,474 - +0.8 948,557 + +0.2 948,577 - +1.6 948,700 + -1.0 948,708 - +0.3 948,782 + -1.9 948,795 + +0.9 948,795 + -0.2 948,795 - +0.3 948,803 - +0.7 948,803 - +0.1 948,803 - -0.5 948,803 - -0.6 948,803 - +0.9 948,803 - +7.6 948,803 - -0.8 948,814 - -0.0 948,819 + -1.1 948,843 + Atu3860 0.11 -0.6 948,843 + Atu3860 0.11 +0.2 948,850 + Atu3860 0.11 -0.7 948,851 - Atu3860 0.11 -0.3 948,851 - Atu3860 0.11 +0.8 948,858 - Atu3860 0.11 +0.7 948,931 - Atu3860 0.15 -1.7 948,932 - Atu3860 0.15 -1.3
Or see this region's nucleotide sequence