Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3793 and Atu3794 overlap by 32 nucleotides Atu3794 and Atu3795 are separated by 209 nucleotides
Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374
Atu3793
Atu3794: Atu3794 - FadR family transcriptional regulator, at 887,343 to 888,059
Atu3794
Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340
Atu3795
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 886.392 kb on + strand, within Atu3793 at 886.429 kb on + strand, within Atu3793 at 886.429 kb on + strand, within Atu3793 at 886.437 kb on - strand, within Atu3793 at 886.494 kb on - strand, within Atu3793 at 886.582 kb on - strand, within Atu3793 at 886.582 kb on - strand, within Atu3793 at 886.665 kb on + strand, within Atu3793 at 886.673 kb on - strand, within Atu3793 at 886.701 kb on - strand, within Atu3793 at 886.702 kb on + strand, within Atu3793 at 886.725 kb on + strand, within Atu3793 at 886.725 kb on + strand, within Atu3793 at 886.733 kb on - strand, within Atu3793 at 886.733 kb on - strand, within Atu3793 at 886.735 kb on + strand, within Atu3793 at 886.758 kb on - strand, within Atu3793 at 886.783 kb on + strand, within Atu3793 at 886.797 kb on + strand, within Atu3793 at 886.797 kb on + strand, within Atu3793 at 886.807 kb on + strand, within Atu3793 at 886.807 kb on + strand, within Atu3793 at 886.815 kb on - strand, within Atu3793 at 886.818 kb on + strand, within Atu3793 at 886.834 kb on + strand, within Atu3793 at 886.839 kb on + strand, within Atu3793 at 886.845 kb on - strand, within Atu3793 at 886.847 kb on - strand, within Atu3793 at 886.879 kb on - strand, within Atu3793 at 886.888 kb on + strand, within Atu3793 at 886.907 kb on - strand, within Atu3793 at 886.929 kb on + strand, within Atu3793 at 886.939 kb on + strand, within Atu3793 at 886.961 kb on - strand, within Atu3793 at 886.991 kb on - strand, within Atu3793 at 887.022 kb on + strand, within Atu3793 at 887.022 kb on + strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.030 kb on - strand, within Atu3793 at 887.058 kb on + strand, within Atu3793 at 887.068 kb on + strand, within Atu3793 at 887.098 kb on + strand, within Atu3793 at 887.193 kb on + strand, within Atu3793 at 887.244 kb on - strand at 887.277 kb on - strand at 887.397 kb on - strand at 887.472 kb on + strand, within Atu3794 at 887.553 kb on + strand, within Atu3794 at 887.562 kb on - strand, within Atu3794 at 887.587 kb on + strand, within Atu3794 at 887.648 kb on - strand, within Atu3794 at 887.813 kb on + strand, within Atu3794 at 887.849 kb on + strand, within Atu3794 at 887.856 kb on + strand, within Atu3794 at 887.856 kb on + strand, within Atu3794 at 887.918 kb on + strand, within Atu3794 at 887.993 kb on - strand at 888.032 kb on + strand at 888.068 kb on - strand at 888.104 kb on - strand at 888.188 kb on + strand at 888.188 kb on + strand at 888.191 kb on - strand at 888.249 kb on + strand at 888.250 kb on + strand at 888.257 kb on - strand at 888.338 kb on - strand at 888.381 kb on - strand at 888.447 kb on - strand at 888.510 kb on + strand at 888.531 kb on + strand at 888.539 kb on - strand at 888.567 kb on - strand at 888.653 kb on - strand, within Atu3795 at 888.660 kb on - strand, within Atu3795 at 888.662 kb on + strand, within Atu3795 at 888.670 kb on - strand, within Atu3795 at 888.684 kb on + strand, within Atu3795 at 888.697 kb on - strand, within Atu3795 at 888.805 kb on - strand, within Atu3795 at 888.805 kb on - strand, within Atu3795 at 888.831 kb on + strand, within Atu3795 at 889.040 kb on + strand, within Atu3795
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 886,392 + Atu3793 0.32 -1.2 886,429 + Atu3793 0.35 +0.2 886,429 + Atu3793 0.35 -0.2 886,437 - Atu3793 0.35 -0.2 886,494 - Atu3793 0.39 -0.8 886,582 - Atu3793 0.45 +0.5 886,582 - Atu3793 0.45 -0.7 886,665 + Atu3793 0.51 -1.8 886,673 - Atu3793 0.51 -0.7 886,701 - Atu3793 0.53 -0.0 886,702 + Atu3793 0.53 +3.0 886,725 + Atu3793 0.55 -0.2 886,725 + Atu3793 0.55 +0.5 886,733 - Atu3793 0.56 +0.1 886,733 - Atu3793 0.56 -0.9 886,735 + Atu3793 0.56 -0.1 886,758 - Atu3793 0.57 -0.4 886,783 + Atu3793 0.59 -0.3 886,797 + Atu3793 0.60 -0.3 886,797 + Atu3793 0.60 -0.3 886,807 + Atu3793 0.61 +0.4 886,807 + Atu3793 0.61 -1.5 886,815 - Atu3793 0.61 +1.4 886,818 + Atu3793 0.61 -1.7 886,834 + Atu3793 0.63 -0.4 886,839 + Atu3793 0.63 +0.5 886,845 - Atu3793 0.63 +0.0 886,847 - Atu3793 0.63 -0.4 886,879 - Atu3793 0.66 -1.1 886,888 + Atu3793 0.66 +4.0 886,907 - Atu3793 0.68 -0.9 886,929 + Atu3793 0.69 -0.6 886,939 + Atu3793 0.70 +0.6 886,961 - Atu3793 0.71 -1.4 886,991 - Atu3793 0.73 -2.1 887,022 + Atu3793 0.76 +1.0 887,022 + Atu3793 0.76 +1.1 887,030 - Atu3793 0.76 -0.5 887,030 - Atu3793 0.76 +0.7 887,030 - Atu3793 0.76 +0.3 887,030 - Atu3793 0.76 +1.4 887,030 - Atu3793 0.76 -0.1 887,030 - Atu3793 0.76 -0.0 887,058 + Atu3793 0.78 +0.1 887,068 + Atu3793 0.79 -0.0 887,098 + Atu3793 0.81 +1.2 887,193 + Atu3793 0.87 +0.1 887,244 - -2.0 887,277 - -1.3 887,397 - +0.8 887,472 + Atu3794 0.18 +1.6 887,553 + Atu3794 0.29 +2.8 887,562 - Atu3794 0.31 +1.0 887,587 + Atu3794 0.34 +0.5 887,648 - Atu3794 0.43 -0.3 887,813 + Atu3794 0.66 +1.8 887,849 + Atu3794 0.71 +2.0 887,856 + Atu3794 0.72 +1.4 887,856 + Atu3794 0.72 +1.1 887,918 + Atu3794 0.80 +1.0 887,993 - +0.6 888,032 + +0.9 888,068 - -1.1 888,104 - +1.7 888,188 + -0.5 888,188 + +1.7 888,191 - +1.3 888,249 + -1.0 888,250 + +0.2 888,257 - -0.4 888,338 - -0.4 888,381 - -1.5 888,447 - -1.9 888,510 + -0.3 888,531 + -0.3 888,539 - +1.5 888,567 - -2.6 888,653 - Atu3795 0.12 +0.3 888,660 - Atu3795 0.13 -0.5 888,662 + Atu3795 0.13 -2.0 888,670 - Atu3795 0.13 +2.8 888,684 + Atu3795 0.14 +1.2 888,697 - Atu3795 0.14 +0.3 888,805 - Atu3795 0.17 -0.6 888,805 - Atu3795 0.17 -0.2 888,831 + Atu3795 0.18 +0.9 889,040 + Atu3795 0.25 +0.3
Or see this region's nucleotide sequence