Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3405 and Atu3406 are separated by 323 nucleotides Atu3406 and Atu3407 are separated by 14 nucleotides
Atu3405: Atu3405 - haloalkanoic acid dehalogenase, at 450,507 to 451,175
Atu3405
Atu3406: Atu3406 - hypothetical protein, at 451,499 to 452,335
Atu3406
Atu3407: Atu3407 - hypothetical protein, at 452,350 to 453,723
Atu3407
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 450.502 kb on + strand at 450.524 kb on - strand at 450.586 kb on - strand, within Atu3405 at 450.603 kb on - strand, within Atu3405 at 450.740 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.769 kb on - strand, within Atu3405 at 450.771 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.876 kb on - strand, within Atu3405 at 450.941 kb on - strand, within Atu3405 at 450.966 kb on + strand, within Atu3405 at 450.974 kb on - strand, within Atu3405 at 451.015 kb on + strand, within Atu3405 at 451.019 kb on + strand, within Atu3405 at 451.242 kb on + strand at 451.341 kb on - strand at 451.424 kb on - strand at 451.510 kb on + strand at 451.577 kb on + strand at 451.604 kb on + strand, within Atu3406 at 451.609 kb on + strand, within Atu3406 at 451.627 kb on + strand, within Atu3406 at 451.698 kb on - strand, within Atu3406 at 451.829 kb on - strand, within Atu3406 at 451.888 kb on + strand, within Atu3406 at 451.911 kb on + strand, within Atu3406 at 451.961 kb on + strand, within Atu3406 at 451.969 kb on - strand, within Atu3406 at 451.979 kb on + strand, within Atu3406 at 452.000 kb on - strand, within Atu3406 at 452.073 kb on + strand, within Atu3406 at 452.160 kb on - strand, within Atu3406 at 452.202 kb on + strand, within Atu3406 at 452.309 kb on + strand at 452.327 kb on - strand at 452.348 kb on - strand at 452.371 kb on + strand at 452.371 kb on + strand at 452.391 kb on + strand at 452.409 kb on - strand at 452.483 kb on + strand at 452.536 kb on + strand, within Atu3407 at 452.709 kb on + strand, within Atu3407 at 452.717 kb on - strand, within Atu3407 at 452.790 kb on + strand, within Atu3407 at 452.798 kb on - strand, within Atu3407 at 452.859 kb on - strand, within Atu3407 at 452.859 kb on - strand, within Atu3407 at 452.863 kb on + strand, within Atu3407 at 452.970 kb on + strand, within Atu3407 at 452.972 kb on - strand, within Atu3407 at 453.060 kb on + strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.089 kb on - strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.245 kb on - strand, within Atu3407 at 453.261 kb on - strand, within Atu3407 at 453.309 kb on - strand, within Atu3407
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 450,502 + +5.4 450,524 - +0.8 450,586 - Atu3405 0.12 -1.0 450,603 - Atu3405 0.14 -1.8 450,740 + Atu3405 0.35 +1.0 450,763 + Atu3405 0.38 +0.1 450,763 + Atu3405 0.38 -0.1 450,763 + Atu3405 0.38 +0.6 450,763 + Atu3405 0.38 -1.4 450,769 - Atu3405 0.39 -1.5 450,771 - Atu3405 0.39 -0.1 450,825 - Atu3405 0.48 -2.8 450,825 - Atu3405 0.48 -0.7 450,853 + Atu3405 0.52 -1.0 450,853 + Atu3405 0.52 +1.6 450,876 - Atu3405 0.55 -1.7 450,941 - Atu3405 0.65 +0.6 450,966 + Atu3405 0.69 -2.3 450,974 - Atu3405 0.70 +0.0 451,015 + Atu3405 0.76 -0.6 451,019 + Atu3405 0.77 +0.5 451,242 + -0.9 451,341 - -0.5 451,424 - +0.1 451,510 + -1.6 451,577 + +0.2 451,604 + Atu3406 0.13 +0.1 451,609 + Atu3406 0.13 +0.1 451,627 + Atu3406 0.15 +1.0 451,698 - Atu3406 0.24 +0.4 451,829 - Atu3406 0.39 -0.1 451,888 + Atu3406 0.46 -0.3 451,911 + Atu3406 0.49 +1.8 451,961 + Atu3406 0.55 -0.5 451,969 - Atu3406 0.56 -0.5 451,979 + Atu3406 0.57 -0.9 452,000 - Atu3406 0.60 +0.8 452,073 + Atu3406 0.69 +0.6 452,160 - Atu3406 0.79 -0.8 452,202 + Atu3406 0.84 -2.5 452,309 + +0.6 452,327 - +0.2 452,348 - +1.2 452,371 + +0.1 452,371 + -0.1 452,391 + -0.7 452,409 - -0.4 452,483 + +0.8 452,536 + Atu3407 0.14 +0.1 452,709 + Atu3407 0.26 +0.7 452,717 - Atu3407 0.27 +0.8 452,790 + Atu3407 0.32 -0.4 452,798 - Atu3407 0.33 +0.4 452,859 - Atu3407 0.37 -1.2 452,859 - Atu3407 0.37 +0.6 452,863 + Atu3407 0.37 +0.2 452,970 + Atu3407 0.45 -0.1 452,972 - Atu3407 0.45 -2.2 453,060 + Atu3407 0.52 +0.4 453,068 - Atu3407 0.52 +2.3 453,068 - Atu3407 0.52 +0.7 453,089 - Atu3407 0.54 +0.2 453,148 + Atu3407 0.58 +1.1 453,148 + Atu3407 0.58 -1.1 453,156 - Atu3407 0.59 +0.3 453,156 - Atu3407 0.59 +0.6 453,245 - Atu3407 0.65 -0.4 453,261 - Atu3407 0.66 +3.3 453,309 - Atu3407 0.70 -0.2
Or see this region's nucleotide sequence