Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3403 and Atu3404 are separated by 90 nucleotides Atu3404 and Atu3405 are separated by 15 nucleotides
Atu3403: Atu3403 - succinate semialdehyde dehydrogenase, at 447,669 to 449,126
Atu3403
Atu3404: Atu3404 - oxidoreductase, at 449,217 to 450,491
Atu3404
Atu3405: Atu3405 - haloalkanoic acid dehalogenase, at 450,507 to 451,175
Atu3405
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 448.369 kb on + strand, within Atu3403 at 448.412 kb on - strand, within Atu3403 at 448.412 kb on - strand, within Atu3403 at 448.550 kb on + strand, within Atu3403 at 448.558 kb on - strand, within Atu3403 at 448.721 kb on + strand, within Atu3403 at 448.735 kb on + strand, within Atu3403 at 448.762 kb on + strand, within Atu3403 at 448.896 kb on + strand, within Atu3403 at 448.910 kb on - strand, within Atu3403 at 448.930 kb on - strand, within Atu3403 at 449.022 kb on + strand at 449.030 kb on - strand at 449.072 kb on - strand at 449.109 kb on - strand at 449.128 kb on - strand at 449.266 kb on + strand at 449.266 kb on + strand at 449.274 kb on - strand at 449.304 kb on + strand at 449.304 kb on + strand at 449.304 kb on + strand at 449.338 kb on + strand at 449.347 kb on + strand, within Atu3404 at 449.374 kb on + strand, within Atu3404 at 449.374 kb on + strand, within Atu3404 at 449.374 kb on + strand, within Atu3404 at 449.382 kb on - strand, within Atu3404 at 449.382 kb on - strand, within Atu3404 at 449.473 kb on - strand, within Atu3404 at 449.607 kb on + strand, within Atu3404 at 449.624 kb on + strand, within Atu3404 at 449.632 kb on - strand, within Atu3404 at 449.674 kb on - strand, within Atu3404 at 449.697 kb on - strand, within Atu3404 at 449.697 kb on - strand, within Atu3404 at 449.780 kb on + strand, within Atu3404 at 449.780 kb on + strand, within Atu3404 at 449.788 kb on - strand, within Atu3404 at 449.794 kb on + strand, within Atu3404 at 449.815 kb on + strand, within Atu3404 at 449.845 kb on + strand, within Atu3404 at 449.864 kb on + strand, within Atu3404 at 449.872 kb on - strand, within Atu3404 at 449.872 kb on - strand, within Atu3404 at 449.927 kb on - strand, within Atu3404 at 450.123 kb on - strand, within Atu3404 at 450.207 kb on + strand, within Atu3404 at 450.212 kb on + strand, within Atu3404 at 450.215 kb on - strand, within Atu3404 at 450.375 kb on + strand at 450.422 kb on - strand at 450.433 kb on - strand at 450.440 kb on - strand at 450.502 kb on + strand at 450.524 kb on - strand at 450.586 kb on - strand, within Atu3405 at 450.603 kb on - strand, within Atu3405 at 450.740 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.763 kb on + strand, within Atu3405 at 450.769 kb on - strand, within Atu3405 at 450.771 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.825 kb on - strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.853 kb on + strand, within Atu3405 at 450.876 kb on - strand, within Atu3405 at 450.941 kb on - strand, within Atu3405 at 450.966 kb on + strand, within Atu3405 at 450.974 kb on - strand, within Atu3405 at 451.015 kb on + strand, within Atu3405 at 451.019 kb on + strand, within Atu3405 at 451.242 kb on + strand at 451.341 kb on - strand at 451.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 448,369 + Atu3403 0.48 +0.6 448,412 - Atu3403 0.51 +0.6 448,412 - Atu3403 0.51 +0.5 448,550 + Atu3403 0.60 +0.5 448,558 - Atu3403 0.61 -1.4 448,721 + Atu3403 0.72 +0.3 448,735 + Atu3403 0.73 -1.3 448,762 + Atu3403 0.75 +0.4 448,896 + Atu3403 0.84 +0.4 448,910 - Atu3403 0.85 +0.2 448,930 - Atu3403 0.86 +0.8 449,022 + +0.7 449,030 - -0.2 449,072 - -0.3 449,109 - -1.4 449,128 - +1.0 449,266 + -0.9 449,266 + -0.6 449,274 - +1.9 449,304 + +0.2 449,304 + -0.6 449,304 + +0.1 449,338 + -0.2 449,347 + Atu3404 0.10 -2.2 449,374 + Atu3404 0.12 -0.7 449,374 + Atu3404 0.12 -0.9 449,374 + Atu3404 0.12 -0.1 449,382 - Atu3404 0.13 +1.4 449,382 - Atu3404 0.13 +0.4 449,473 - Atu3404 0.20 -0.6 449,607 + Atu3404 0.31 +0.4 449,624 + Atu3404 0.32 -0.8 449,632 - Atu3404 0.33 +0.3 449,674 - Atu3404 0.36 -0.8 449,697 - Atu3404 0.38 -0.1 449,697 - Atu3404 0.38 +0.9 449,780 + Atu3404 0.44 -1.7 449,780 + Atu3404 0.44 -0.2 449,788 - Atu3404 0.45 +0.9 449,794 + Atu3404 0.45 +1.3 449,815 + Atu3404 0.47 -1.0 449,845 + Atu3404 0.49 +6.0 449,864 + Atu3404 0.51 +0.3 449,872 - Atu3404 0.51 -2.1 449,872 - Atu3404 0.51 -0.9 449,927 - Atu3404 0.56 +1.8 450,123 - Atu3404 0.71 -0.0 450,207 + Atu3404 0.78 -0.2 450,212 + Atu3404 0.78 +0.4 450,215 - Atu3404 0.78 -0.6 450,375 + +0.4 450,422 - -0.7 450,433 - +0.0 450,440 - -0.4 450,502 + +5.4 450,524 - +0.8 450,586 - Atu3405 0.12 -1.0 450,603 - Atu3405 0.14 -1.8 450,740 + Atu3405 0.35 +1.0 450,763 + Atu3405 0.38 +0.1 450,763 + Atu3405 0.38 -0.1 450,763 + Atu3405 0.38 +0.6 450,763 + Atu3405 0.38 -1.4 450,769 - Atu3405 0.39 -1.5 450,771 - Atu3405 0.39 -0.1 450,825 - Atu3405 0.48 -2.8 450,825 - Atu3405 0.48 -0.7 450,853 + Atu3405 0.52 -1.0 450,853 + Atu3405 0.52 +1.6 450,876 - Atu3405 0.55 -1.7 450,941 - Atu3405 0.65 +0.6 450,966 + Atu3405 0.69 -2.3 450,974 - Atu3405 0.70 +0.0 451,015 + Atu3405 0.76 -0.6 451,019 + Atu3405 0.77 +0.5 451,242 + -0.9 451,341 - -0.5 451,424 - +0.1
Or see this region's nucleotide sequence