Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3203 and Atu3204 are separated by 341 nucleotides Atu3204 and Atu3205 are separated by 97 nucleotides
Atu3203: Atu3203 - RND multidrug efflux membrane permease, at 214,582 to 215,796
Atu3203
Atu3204: Atu3204 - diguanylate cyclase, at 216,138 to 217,715
Atu3204
Atu3205: Atu3205 - hypothetical protein, at 217,813 to 218,607
Atu3205
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.142 kb on - strand, within Atu3203 at 215.152 kb on - strand, within Atu3203 at 215.274 kb on - strand, within Atu3203 at 215.292 kb on - strand, within Atu3203 at 215.303 kb on - strand, within Atu3203 at 215.425 kb on + strand, within Atu3203 at 215.460 kb on + strand, within Atu3203 at 215.488 kb on + strand, within Atu3203 at 215.681 kb on + strand at 215.689 kb on - strand at 215.700 kb on + strand at 215.732 kb on - strand at 215.735 kb on + strand at 215.753 kb on + strand at 215.756 kb on + strand at 215.766 kb on - strand at 215.911 kb on - strand at 215.918 kb on + strand at 215.918 kb on + strand at 215.918 kb on + strand at 215.938 kb on - strand at 215.938 kb on - strand at 215.966 kb on - strand at 215.995 kb on - strand at 215.999 kb on + strand at 215.999 kb on + strand at 215.999 kb on + strand at 215.999 kb on + strand at 215.999 kb on + strand at 216.007 kb on - strand at 216.007 kb on - strand at 216.054 kb on + strand at 216.055 kb on + strand at 216.056 kb on + strand at 216.062 kb on - strand at 216.067 kb on + strand at 216.094 kb on + strand at 216.102 kb on - strand at 216.198 kb on + strand at 216.278 kb on - strand at 216.285 kb on - strand at 216.369 kb on - strand, within Atu3204 at 216.372 kb on + strand, within Atu3204 at 216.372 kb on + strand, within Atu3204 at 216.372 kb on + strand, within Atu3204 at 216.372 kb on + strand, within Atu3204 at 216.372 kb on + strand, within Atu3204 at 216.380 kb on - strand, within Atu3204 at 216.486 kb on + strand, within Atu3204 at 216.492 kb on - strand, within Atu3204 at 216.494 kb on - strand, within Atu3204 at 216.504 kb on - strand, within Atu3204 at 216.562 kb on - strand, within Atu3204 at 216.634 kb on - strand, within Atu3204 at 216.657 kb on + strand, within Atu3204 at 216.660 kb on - strand, within Atu3204 at 216.713 kb on + strand, within Atu3204 at 216.750 kb on + strand, within Atu3204 at 216.758 kb on - strand, within Atu3204 at 216.758 kb on - strand, within Atu3204 at 216.946 kb on + strand, within Atu3204 at 216.964 kb on - strand, within Atu3204 at 217.072 kb on + strand, within Atu3204 at 217.103 kb on + strand, within Atu3204 at 217.143 kb on - strand, within Atu3204 at 217.236 kb on + strand, within Atu3204 at 217.302 kb on - strand, within Atu3204 at 217.505 kb on - strand, within Atu3204 at 217.529 kb on + strand, within Atu3204 at 217.539 kb on - strand, within Atu3204 at 217.571 kb on - strand at 217.627 kb on - strand at 217.793 kb on - strand at 217.844 kb on + strand at 217.849 kb on - strand at 217.852 kb on - strand at 217.874 kb on - strand at 217.935 kb on + strand, within Atu3205 at 217.935 kb on + strand, within Atu3205 at 217.935 kb on + strand, within Atu3205 at 217.938 kb on + strand, within Atu3205 at 217.943 kb on - strand, within Atu3205 at 217.948 kb on - strand, within Atu3205 at 217.983 kb on + strand, within Atu3205 at 218.030 kb on - strand, within Atu3205 at 218.051 kb on + strand, within Atu3205 at 218.224 kb on + strand, within Atu3205 at 218.325 kb on + strand, within Atu3205 at 218.470 kb on - strand, within Atu3205 at 218.499 kb on - strand, within Atu3205 at 218.499 kb on - strand, within Atu3205 at 218.508 kb on + strand, within Atu3205 at 218.536 kb on - strand at 218.536 kb on - strand at 218.601 kb on - strand at 218.602 kb on + strand at 218.602 kb on + strand at 218.615 kb on + strand at 218.673 kb on - strand at 218.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 215,142 - Atu3203 0.46 +0.4 215,152 - Atu3203 0.47 -2.2 215,274 - Atu3203 0.57 -1.0 215,292 - Atu3203 0.58 +0.7 215,303 - Atu3203 0.59 +0.4 215,425 + Atu3203 0.69 -0.1 215,460 + Atu3203 0.72 -0.6 215,488 + Atu3203 0.75 -0.7 215,681 + -0.5 215,689 - +0.0 215,700 + +0.5 215,732 - +0.8 215,735 + +0.9 215,753 + +0.0 215,756 + +0.2 215,766 - +0.6 215,911 - -0.1 215,918 + +0.2 215,918 + -1.8 215,918 + -1.0 215,938 - +3.1 215,938 - +1.5 215,966 - -0.6 215,995 - -1.7 215,999 + +0.4 215,999 + -0.0 215,999 + +1.3 215,999 + -0.8 215,999 + +0.4 216,007 - +2.0 216,007 - -0.4 216,054 + +1.2 216,055 + +0.8 216,056 + +0.0 216,062 - -0.2 216,067 + -1.0 216,094 + +0.3 216,102 - -0.1 216,198 + -0.7 216,278 - +0.1 216,285 - +0.9 216,369 - Atu3204 0.15 -0.2 216,372 + Atu3204 0.15 -0.4 216,372 + Atu3204 0.15 +0.2 216,372 + Atu3204 0.15 -1.2 216,372 + Atu3204 0.15 +0.0 216,372 + Atu3204 0.15 -1.2 216,380 - Atu3204 0.15 -1.0 216,486 + Atu3204 0.22 +0.2 216,492 - Atu3204 0.22 -0.6 216,494 - Atu3204 0.23 +0.6 216,504 - Atu3204 0.23 -2.0 216,562 - Atu3204 0.27 -1.0 216,634 - Atu3204 0.31 -0.0 216,657 + Atu3204 0.33 -2.9 216,660 - Atu3204 0.33 -2.0 216,713 + Atu3204 0.36 -2.2 216,750 + Atu3204 0.39 -0.1 216,758 - Atu3204 0.39 +0.8 216,758 - Atu3204 0.39 -0.0 216,946 + Atu3204 0.51 -0.6 216,964 - Atu3204 0.52 -1.2 217,072 + Atu3204 0.59 +0.1 217,103 + Atu3204 0.61 +0.0 217,143 - Atu3204 0.64 -0.3 217,236 + Atu3204 0.70 +0.0 217,302 - Atu3204 0.74 -0.5 217,505 - Atu3204 0.87 -1.9 217,529 + Atu3204 0.88 -1.3 217,539 - Atu3204 0.89 +0.5 217,571 - -0.0 217,627 - +1.7 217,793 - -0.6 217,844 + -0.3 217,849 - +0.4 217,852 - +0.3 217,874 - -0.5 217,935 + Atu3205 0.15 -1.6 217,935 + Atu3205 0.15 -0.6 217,935 + Atu3205 0.15 +0.2 217,938 + Atu3205 0.16 +0.4 217,943 - Atu3205 0.16 -0.1 217,948 - Atu3205 0.17 -0.1 217,983 + Atu3205 0.21 +0.4 218,030 - Atu3205 0.27 +0.9 218,051 + Atu3205 0.30 -1.2 218,224 + Atu3205 0.52 -0.2 218,325 + Atu3205 0.64 -0.3 218,470 - Atu3205 0.83 -0.3 218,499 - Atu3205 0.86 +0.4 218,499 - Atu3205 0.86 +0.0 218,508 + Atu3205 0.87 +0.0 218,536 - -2.7 218,536 - +0.1 218,601 - +1.0 218,602 + +0.8 218,602 + -1.2 218,615 + +0.4 218,673 - -2.7 218,683 + -0.3
Or see this region's nucleotide sequence