Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3173 and Atu3174 are separated by 210 nucleotides Atu3174 and Atu3175 are separated by 38 nucleotides
Atu3173: Atu3173 - sugar ABC transporter permease, at 182,870 to 183,754
Atu3173
Atu3174: Atu3174 - sugar ABC transporter substrate-binding protein, at 183,965 to 185,224
Atu3174
Atu3175: Atu3175 - hypothetical protein, at 185,263 to 186,435
Atu3175
Position (kb) 183
184
185
186 Strain fitness (log2 ratio) -2
-1
0
1 at 183.206 kb on + strand, within Atu3173 at 183.207 kb on + strand, within Atu3173 at 183.345 kb on - strand, within Atu3173 at 183.345 kb on - strand, within Atu3173 at 183.377 kb on - strand, within Atu3173 at 183.379 kb on + strand, within Atu3173 at 183.417 kb on + strand, within Atu3173 at 183.425 kb on - strand, within Atu3173 at 183.443 kb on + strand, within Atu3173 at 183.528 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.656 kb on - strand, within Atu3173 at 183.656 kb on - strand, within Atu3173 at 183.722 kb on - strand at 183.722 kb on - strand at 183.726 kb on + strand at 183.733 kb on - strand at 183.802 kb on + strand at 183.817 kb on - strand at 183.870 kb on - strand at 184.118 kb on - strand, within Atu3174 at 184.137 kb on + strand, within Atu3174 at 184.145 kb on - strand, within Atu3174 at 184.164 kb on - strand, within Atu3174 at 184.175 kb on - strand, within Atu3174 at 184.175 kb on - strand, within Atu3174 at 184.233 kb on + strand, within Atu3174 at 184.275 kb on - strand, within Atu3174 at 184.293 kb on - strand, within Atu3174 at 184.556 kb on + strand, within Atu3174 at 184.564 kb on - strand, within Atu3174 at 184.604 kb on - strand, within Atu3174 at 184.618 kb on + strand, within Atu3174 at 184.626 kb on - strand, within Atu3174 at 184.648 kb on + strand, within Atu3174 at 184.658 kb on + strand, within Atu3174 at 184.692 kb on - strand, within Atu3174 at 184.718 kb on - strand, within Atu3174 at 184.813 kb on + strand, within Atu3174 at 184.821 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 185.005 kb on + strand, within Atu3174 at 185.045 kb on - strand, within Atu3174 at 185.132 kb on + strand at 185.140 kb on - strand at 185.787 kb on + strand, within Atu3175 at 185.881 kb on + strand, within Atu3175 at 185.948 kb on - strand, within Atu3175 at 185.996 kb on - strand, within Atu3175 at 186.082 kb on - strand, within Atu3175 at 186.135 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 183,206 + Atu3173 0.38 -0.0 183,207 + Atu3173 0.38 -0.5 183,345 - Atu3173 0.54 +0.7 183,345 - Atu3173 0.54 -0.8 183,377 - Atu3173 0.57 -1.3 183,379 + Atu3173 0.58 +1.0 183,417 + Atu3173 0.62 -0.7 183,425 - Atu3173 0.63 -0.9 183,443 + Atu3173 0.65 -2.1 183,528 + Atu3173 0.74 -0.2 183,648 + Atu3173 0.88 -0.7 183,648 + Atu3173 0.88 -1.3 183,648 + Atu3173 0.88 +1.3 183,648 + Atu3173 0.88 -0.1 183,656 - Atu3173 0.89 -0.0 183,656 - Atu3173 0.89 -1.0 183,722 - +0.5 183,722 - -0.2 183,726 + -0.3 183,733 - -0.6 183,802 + +1.6 183,817 - +0.2 183,870 - -1.4 184,118 - Atu3174 0.12 -0.0 184,137 + Atu3174 0.14 -0.4 184,145 - Atu3174 0.14 +0.4 184,164 - Atu3174 0.16 +0.4 184,175 - Atu3174 0.17 -0.0 184,175 - Atu3174 0.17 -0.6 184,233 + Atu3174 0.21 +0.5 184,275 - Atu3174 0.25 +0.1 184,293 - Atu3174 0.26 -0.3 184,556 + Atu3174 0.47 -0.6 184,564 - Atu3174 0.48 +0.6 184,604 - Atu3174 0.51 +1.0 184,618 + Atu3174 0.52 -0.9 184,626 - Atu3174 0.52 -0.4 184,648 + Atu3174 0.54 -0.9 184,658 + Atu3174 0.55 +0.4 184,692 - Atu3174 0.58 +0.6 184,718 - Atu3174 0.60 -0.9 184,813 + Atu3174 0.67 +0.1 184,821 - Atu3174 0.68 +0.0 184,926 - Atu3174 0.76 +0.2 184,926 - Atu3174 0.76 -1.4 185,005 + Atu3174 0.83 -0.3 185,045 - Atu3174 0.86 -0.8 185,132 + -0.0 185,140 - -0.6 185,787 + Atu3175 0.45 -0.4 185,881 + Atu3175 0.53 -0.7 185,948 - Atu3175 0.58 -0.7 185,996 - Atu3175 0.62 -1.1 186,082 - Atu3175 0.70 -1.0 186,135 - Atu3175 0.74 +0.7 186,163 - Atu3175 0.77 -0.0 186,163 - Atu3175 0.77 +0.3
Or see this region's nucleotide sequence