Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0071 and Atu0072 are separated by 29 nucleotides Atu0072 and Atu0073 are separated by 28 nucleotides
Atu0071: Atu0071 - ribonucleoside-diphosphate reductase 2 beta chain, at 73,777 to 74,751
Atu0071
Atu0072: Atu0072 - hypothetical protein, at 74,781 to 76,016
Atu0072
Atu0073: Atu0073 - recF-like protein, at 76,045 to 77,172
Atu0073
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.837 kb on - strand at 73.996 kb on + strand, within Atu0071 at 74.087 kb on - strand, within Atu0071 at 74.140 kb on + strand, within Atu0071 at 74.152 kb on + strand, within Atu0071 at 74.301 kb on + strand, within Atu0071 at 74.306 kb on + strand, within Atu0071 at 74.586 kb on + strand, within Atu0071 at 74.760 kb on - strand at 74.762 kb on + strand at 74.925 kb on + strand, within Atu0072 at 74.935 kb on + strand, within Atu0072 at 74.965 kb on - strand, within Atu0072 at 75.103 kb on + strand, within Atu0072 at 75.109 kb on - strand, within Atu0072 at 75.111 kb on + strand, within Atu0072 at 75.111 kb on + strand, within Atu0072 at 75.121 kb on + strand, within Atu0072 at 75.187 kb on + strand, within Atu0072 at 75.346 kb on - strand, within Atu0072 at 75.378 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.508 kb on - strand, within Atu0072 at 75.587 kb on - strand, within Atu0072 at 75.726 kb on - strand, within Atu0072 at 75.757 kb on - strand, within Atu0072 at 75.859 kb on - strand, within Atu0072 at 75.907 kb on - strand at 75.963 kb on - strand at 76.138 kb on - strand at 76.443 kb on + strand, within Atu0073 at 76.668 kb on + strand, within Atu0073 at 76.842 kb on + strand, within Atu0073 at 76.897 kb on + strand, within Atu0073 at 76.948 kb on - strand, within Atu0073 at 76.965 kb on - strand, within Atu0073 at 76.988 kb on + strand, within Atu0073
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 73,837 - -1.7 73,996 + Atu0071 0.22 -2.3 74,087 - Atu0071 0.32 -0.8 74,140 + Atu0071 0.37 -0.4 74,152 + Atu0071 0.38 -1.1 74,301 + Atu0071 0.54 -0.7 74,306 + Atu0071 0.54 -0.9 74,586 + Atu0071 0.83 -0.5 74,760 - -1.6 74,762 + -0.3 74,925 + Atu0072 0.12 -0.8 74,935 + Atu0072 0.12 -1.1 74,965 - Atu0072 0.15 -0.6 75,103 + Atu0072 0.26 +1.2 75,109 - Atu0072 0.27 -0.1 75,111 + Atu0072 0.27 -0.3 75,111 + Atu0072 0.27 +0.8 75,121 + Atu0072 0.28 +2.5 75,187 + Atu0072 0.33 +1.2 75,346 - Atu0072 0.46 +0.2 75,378 - Atu0072 0.48 -0.9 75,439 - Atu0072 0.53 +2.2 75,439 - Atu0072 0.53 -0.4 75,439 - Atu0072 0.53 +0.8 75,508 - Atu0072 0.59 +0.2 75,587 - Atu0072 0.65 +1.4 75,726 - Atu0072 0.76 +0.3 75,757 - Atu0072 0.79 -0.5 75,859 - Atu0072 0.87 -1.6 75,907 - -1.3 75,963 - -0.0 76,138 - +0.6 76,443 + Atu0073 0.35 -1.9 76,668 + Atu0073 0.55 -0.3 76,842 + Atu0073 0.71 +1.3 76,897 + Atu0073 0.76 -1.6 76,948 - Atu0073 0.80 -0.5 76,965 - Atu0073 0.82 +0.0 76,988 + Atu0073 0.84 -0.2
Or see this region's nucleotide sequence