Strain Fitness in Pseudomonas putida KT2440 around PP_4574

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4573 and PP_4574 are separated by 13 nucleotidesPP_4574 and PP_4575 are separated by 52 nucleotidesPP_4575 and PP_4576 overlap by 4 nucleotides PP_4573: PP_4573 - ATPase, AAA family, at 5,192,821 to 5,193,666 _4573 PP_4574: PP_4574 - conserved protein of unknown function, at 5,193,680 to 5,194,858 _4574 PP_4575: PP_4575 - Urea amidolyase-related protein, at 5,194,911 to 5,195,828 _4575 PP_4576: PP_4576 - allophanate hydrolase subunit, at 5,195,825 to 5,196,514 _4576 Position (kb) 5193 5194 5195Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5192.686 kb on + strandat 5192.687 kb on - strandat 5192.688 kb on + strandat 5192.741 kb on - strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.763 kb on + strandat 5192.763 kb on + strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5193.028 kb on + strand, within PP_4573at 5193.029 kb on - strand, within PP_4573at 5193.034 kb on + strand, within PP_4573at 5193.100 kb on + strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.289 kb on - strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.347 kb on - strand, within PP_4573at 5193.370 kb on - strand, within PP_4573at 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.618 kb on - strandat 5193.618 kb on - strandat 5193.618 kb on - strandat 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.915 kb on + strand, within PP_4574at 5194.009 kb on + strand, within PP_4574at 5194.010 kb on - strand, within PP_4574at 5194.478 kb on + strand, within PP_4574at 5194.481 kb on + strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.484 kb on + strand, within PP_4574at 5194.484 kb on + strand, within PP_4574at 5194.485 kb on - strand, within PP_4574at 5194.485 kb on - strand, within PP_4574at 5194.503 kb on - strand, within PP_4574at 5194.503 kb on - strandat 5194.575 kb on - strand, within PP_4574at 5194.575 kb on - strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.587 kb on - strand, within PP_4574at 5194.757 kb on + strandat 5194.757 kb on + strandat 5194.758 kb on - strandat 5194.758 kb on - strandat 5194.758 kb on - strandat 5194.805 kb on + strandat 5194.805 kb on + strandat 5194.805 kb on + strandat 5194.805 kb on + strandat 5194.806 kb on - strandat 5194.806 kb on - strandat 5194.806 kb on - strandat 5194.845 kb on - strandat 5194.912 kb on + strandat 5194.930 kb on + strandat 5194.930 kb on + strandat 5195.112 kb on + strand, within PP_4575at 5195.112 kb on + strand, within PP_4575at 5195.159 kb on - strand, within PP_4575at 5195.159 kb on - strand, within PP_4575at 5195.159 kb on - strand, within PP_4575at 5195.427 kb on + strand, within PP_4575at 5195.428 kb on - strand, within PP_4575at 5195.428 kb on - strand, within PP_4575at 5195.488 kb on + strand, within PP_4575

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Per-strain Table

Position Strand Gene LocusTag Fraction 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
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5,192,686 + -0.3
5,192,687 - +0.5
5,192,688 + +0.4
5,192,741 - -1.1
5,192,760 + -0.5
5,192,760 + +0.8
5,192,760 + -0.7
5,192,761 - -1.2
5,192,761 - -0.9
5,192,761 - -0.0
5,192,761 - -0.5
5,192,761 - +0.4
5,192,761 - -0.4
5,192,763 + -0.1
5,192,763 + -0.4
5,192,764 - +2.1
5,192,764 - +0.2
5,192,764 - +0.2
5,192,764 - -0.4
5,193,028 + PP_4573 0.24 -0.8
5,193,029 - PP_4573 0.25 -0.1
5,193,034 + PP_4573 0.25 +0.5
5,193,100 + PP_4573 0.33 -0.9
5,193,101 - PP_4573 0.33 +0.2
5,193,101 - PP_4573 0.33 -0.5
5,193,232 + PP_4573 0.49 +0.1
5,193,232 + PP_4573 0.49 -1.3
5,193,233 - PP_4573 0.49 +1.0
5,193,233 - PP_4573 0.49 -0.5
5,193,233 - PP_4573 0.49 -0.1
5,193,233 - PP_4573 0.49 -0.9
5,193,233 - PP_4573 0.49 -0.9
5,193,233 - PP_4573 0.49 +0.1
5,193,288 + PP_4573 0.55 +0.4
5,193,288 + PP_4573 0.55 +0.7
5,193,289 - PP_4573 0.55 -0.8
5,193,346 + PP_4573 0.62 -0.1
5,193,346 + PP_4573 0.62 -1.1
5,193,346 + PP_4573 0.62 +0.1
5,193,346 + PP_4573 0.62 +2.1
5,193,347 - PP_4573 0.62 -0.1
5,193,370 - PP_4573 0.65 +0.7
5,193,617 + -0.3
5,193,617 + -0.2
5,193,617 + +0.1
5,193,617 + -0.1
5,193,618 - +0.5
5,193,618 - +0.5
5,193,618 - -0.7
5,193,800 + PP_4574 0.10 -0.2
5,193,800 + PP_4574 0.10 +0.6
5,193,800 + PP_4574 0.10 +0.8
5,193,800 + PP_4574 0.10 +0.6
5,193,800 + PP_4574 0.10 -0.7
5,193,801 - PP_4574 0.10 +1.6
5,193,801 - PP_4574 0.10 +1.4
5,193,801 - PP_4574 0.10 +0.9
5,193,801 - PP_4574 0.10 -1.0
5,193,915 + PP_4574 0.20 +0.9
5,194,009 + PP_4574 0.28 -0.3
5,194,010 - PP_4574 0.28 +0.1
5,194,478 + PP_4574 0.68 -0.1
5,194,481 + PP_4574 0.68 -0.9
5,194,482 - PP_4574 0.68 +0.3
5,194,482 - PP_4574 0.68 -1.0
5,194,482 - PP_4574 0.68 +0.3
5,194,482 - PP_4574 0.68 -0.2
5,194,482 - PP_4574 0.68 +0.6
5,194,484 + PP_4574 0.68 +1.1
5,194,484 + PP_4574 0.68 -0.0
5,194,485 - PP_4574 0.68 +3.1
5,194,485 - PP_4574 0.68 -0.3
5,194,503 - PP_4574 0.70 +1.2
5,194,503 - +1.1
5,194,575 - PP_4574 0.76 -0.4
5,194,575 - PP_4574 0.76 -0.5
5,194,586 + PP_4574 0.77 -0.6
5,194,586 + PP_4574 0.77 -1.2
5,194,586 + PP_4574 0.77 -0.6
5,194,587 - PP_4574 0.77 +0.2
5,194,757 + -0.4
5,194,757 + -0.5
5,194,758 - -0.0
5,194,758 - -2.0
5,194,758 - -0.2
5,194,805 + -1.1
5,194,805 + +0.7
5,194,805 + -1.2
5,194,805 + +0.5
5,194,806 - +0.2
5,194,806 - -0.2
5,194,806 - -0.4
5,194,845 - +0.1
5,194,912 + -0.7
5,194,930 + -0.3
5,194,930 + +0.3
5,195,112 + PP_4575 0.22 +1.1
5,195,112 + PP_4575 0.22 +2.1
5,195,159 - PP_4575 0.27 -1.1
5,195,159 - PP_4575 0.27 -1.1
5,195,159 - PP_4575 0.27 +0.3
5,195,427 + PP_4575 0.56 -0.3
5,195,428 - PP_4575 0.56 -1.3
5,195,428 - PP_4575 0.56 +0.4
5,195,488 + PP_4575 0.63 -0.3

Or see this region's nucleotide sequence