Strain Fitness in Pseudomonas putida KT2440 around PP_1328

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
1,512,519	+		PP_1326	0.88	-1.7
1,512,519	+		PP_1326	0.88	-2.0
1,512,593	+				+2.1
1,512,593	+				-1.4
1,512,593	+				-0.7
1,512,594	-				+0.5
1,512,594	-				-0.6
1,512,594	-				-0.7
1,512,626	+				+0.4
1,512,642	+				-1.1
1,512,642	+				+0.2
1,512,643	-				-0.2
1,513,095	+				-0.1
1,513,138	+				+1.1
1,513,235	+				+0.1
1,513,250	+				-3.2
1,513,299	+				-2.0
1,513,299	+				-3.2
1,513,299	+				-0.9
1,513,301	+				-0.7
1,513,301	+				-2.1
1,513,357	+				-1.2
1,513,546	+		PP_1328	0.39	-1.8
1,513,546	+		PP_1328	0.39	-2.4
1,513,546	+		PP_1328	0.39	-2.8
1,513,546	+				+0.1