Strain Fitness in Pseudomonas putida KT2440 around PP_0910

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
1,050,950	-				-2.1
1,051,038	-		PP_0909	0.17	-0.7
1,051,038	-		PP_0909	0.17	-0.3
1,051,319	-		PP_0909	0.44	+2.1
1,051,319	-		PP_0909	0.44	-2.3
1,051,492	+		PP_0909	0.60	-0.7
1,051,492	+		PP_0909	0.60	-1.3
1,051,492	+		PP_0909	0.60	-1.1
1,051,493	-		PP_0909	0.60	-1.5
1,051,493	-		PP_0909	0.60	+2.1
1,051,498	+		PP_0909	0.60	-1.1
1,051,515	+		PP_0909	0.62	-0.8
1,051,515	+		PP_0909	0.62	-1.8
1,051,515	+		PP_0909	0.62	-1.6
1,051,516	-		PP_0909	0.62	-1.4
1,051,516	-				+1.1
1,051,516	-		PP_0909	0.62	-0.5
1,051,522	-		PP_0909	0.63	+0.6
1,051,623	+		PP_0909	0.72	-2.5
1,051,624	-		PP_0909	0.72	+0.7
1,051,747	+		PP_0909	0.84	-0.4
1,051,747	+		PP_0909	0.84	-1.5
1,051,747	+		PP_0909	0.84	+2.1
1,051,748	-		PP_0909	0.84	-1.4
1,051,798	+		PP_0909	0.89	+2.1
1,051,798	+		PP_0909	0.89	-2.5
1,051,798	+		PP_0909	0.89	-2.3
1,051,798	+		PP_0909	0.89	-0.7
1,051,799	-		PP_0909	0.89	-0.1
1,051,802	+		PP_0909	0.89	-2.6
1,051,803	-		PP_0909	0.89	-0.6
1,052,085	+		PP_0910	0.10	-3.8
1,052,133	+		PP_0910	0.14	-0.5
1,052,309	+		PP_0910	0.26	-0.5
1,052,309	+		PP_0910	0.26	-1.4
1,052,858	+		PP_0910	0.64	-1.4
1,052,858	+		PP_0910	0.64	-1.5
1,052,859	-		PP_0910	0.64	-2.3
1,052,925	-				+2.1
1,052,925	-		PP_0910	0.69	-2.6
1,052,972	+		PP_0910	0.72	-0.9
1,052,973	-		PP_0910	0.72	-0.4
1,052,999	-		PP_0910	0.74	-3.0
1,053,085	-		PP_0910	0.80	-1.7
1,053,162	+		PP_0910	0.86	-1.6
1,053,184	+		PP_0910	0.87	-2.2
1,053,218	+		PP_0910	0.90	+0.1
1,053,218	+		PP_0910	0.90	-1.5
1,053,219	-		PP_0910	0.90	+1.6
1,053,406	+				-1.2
1,053,406	+				-1.5
1,053,406	+				-0.3
1,053,484	+				-2.1
1,053,484	+				-1.1
1,053,484	+				+0.8
1,053,484	+				-0.2
1,053,485	-				+0.3
1,053,485	-				+0.3
1,053,485	-				-1.1
1,053,486	+				-0.1
1,053,486	+				-1.0
1,053,486	+				+0.3
1,053,486	+				-0.8
1,053,487	-				+0.2
1,053,487	-				-0.4
1,053,487	-				-0.1
1,053,487	-				-0.1
1,053,487	-				-1.1
1,053,487	-				+0.6
1,053,487	-				-0.2
1,053,487	-				+0.5
1,053,487	-				+0.9
1,053,547	+		PP_0911	0.18	-1.8
1,053,582	+		PP_0911	0.27	+0.1
1,053,583	-		PP_0911	0.28	-2.3
1,053,602	-		PP_0911	0.33	+0.5
1,053,639	+		PP_0911	0.42	-0.7
1,053,639	+		PP_0911	0.42	+1.1
1,053,650	+		PP_0911	0.45	+0.9
1,053,651	-		PP_0911	0.45	-1.1
1,053,814	+		PP_0911	0.87	-0.9
1,053,814	+		PP_0911	0.87	+0.2
1,053,814	+		PP_0911	0.87	-0.7
1,053,814	+		PP_0911	0.87	+0.1
1,053,814	+		PP_0911	0.87	-0.3
1,053,815	-		PP_0911	0.88	-0.5
1,053,815	-		PP_0911	0.88	+0.7
1,053,815	-		PP_0911	0.88	+0.7
1,053,815	-		PP_0911	0.88	-0.9
1,053,815	-		PP_0911	0.88	+0.7
1,053,815	-		PP_0911	0.88	-0.1
1,053,817	-		PP_0911	0.88	-1.7
1,053,827	-				+0.4
1,053,846	+				-0.8
1,053,847	-				+0.6
1,053,847	-				+0.6
1,053,847	-				+0.0
1,053,847	-				+1.5
1,053,847	-				+1.2
1,053,847	-				+0.8
1,053,928	+				-0.7
1,053,928	+				+0.1
1,053,929	-				-0.8
1,054,058	-		PP_0912	0.31	-1.3
1,054,058	-		PP_0912	0.31	-2.0
1,054,058	-		PP_0912	0.31	-0.5
1,054,064	-		PP_0912	0.32	-0.4
1,054,064	-		PP_0912	0.32	+0.9
1,054,086	+		PP_0912	0.36	-0.2
1,054,087	-		PP_0912	0.36	+0.2
1,054,186	+		PP_0912	0.53	+0.5
1,054,187	-		PP_0912	0.53	+0.4
1,054,187	-		PP_0912	0.53	+1.7
1,054,192	+		PP_0912	0.54	+0.3
1,054,193	-		PP_0912	0.54	-0.9
1,054,193	-		PP_0912	0.54	+0.3
1,054,194	+		PP_0912	0.54	-0.6
1,054,195	-		PP_0912	0.54	-0.7
1,054,195	-		PP_0912	0.54	-0.9
1,054,270	+		PP_0912	0.67	+0.1
1,054,270	+		PP_0912	0.67	-1.5
1,054,271	-		PP_0912	0.67	+0.5
1,054,271	-		PP_0912	0.67	-0.7