Strain Fitness in Pseudomonas putida KT2440 around PP_0767

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0766 and PP_0767 are separated by 327 nucleotidesPP_0767 and PP_0768 are separated by 159 nucleotides PP_0766: PP_0766 - adhesin-associated sorting protein (DUF1329) (from data), at 882,398 to 883,762 _0766 PP_0767: PP_0767 - Transcriptional regulator, LuxR family, at 884,090 to 886,807 _0767 PP_0768: PP_0768 - Response regulator/TPR domain protein, at 886,967 to 888,574 _0768 Position (kb) 884 885 886 887Strain fitness (log2 ratio) -2 -1 0 1 2 3at 883.169 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.170 kb on - strand, within PP_0766at 883.215 kb on - strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.250 kb on - strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.370 kb on + strand, within PP_0766at 883.371 kb on - strand, within PP_0766at 883.443 kb on + strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.497 kb on - strand, within PP_0766at 883.539 kb on - strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.590 kb on - strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.631 kb on + strandat 883.631 kb on + strandat 883.632 kb on - strandat 883.632 kb on - strandat 883.653 kb on - strandat 883.692 kb on - strandat 883.860 kb on + strandat 883.861 kb on - strandat 883.926 kb on + strandat 883.926 kb on + strandat 883.927 kb on - strandat 883.927 kb on - strandat 883.999 kb on - strandat 884.317 kb on + strandat 884.317 kb on + strandat 884.522 kb on - strand, within PP_0767at 884.522 kb on - strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.699 kb on - strand, within PP_0767at 884.912 kb on + strand, within PP_0767at 884.940 kb on + strand, within PP_0767at 885.389 kb on + strand, within PP_0767at 885.389 kb on + strand, within PP_0767at 885.390 kb on - strand, within PP_0767at 885.447 kb on - strand, within PP_0767at 885.529 kb on - strand, within PP_0767at 885.529 kb on - strand, within PP_0767at 885.529 kb on - strand, within PP_0767at 885.749 kb on + strand, within PP_0767at 885.854 kb on + strand, within PP_0767at 885.855 kb on - strand, within PP_0767at 885.881 kb on + strand, within PP_0767at 885.882 kb on - strand, within PP_0767at 885.891 kb on - strand, within PP_0767at 886.100 kb on + strand, within PP_0767at 886.100 kb on + strand, within PP_0767at 886.101 kb on - strand, within PP_0767at 886.200 kb on - strand, within PP_0767at 886.200 kb on - strand, within PP_0767at 886.200 kb on - strand, within PP_0767at 886.200 kb on - strand, within PP_0767at 886.200 kb on - strand, within PP_0767at 886.297 kb on + strand, within PP_0767at 886.333 kb on - strand, within PP_0767at 886.367 kb on - strand, within PP_0767at 886.367 kb on - strand, within PP_0767at 886.367 kb on - strand, within PP_0767at 886.367 kb on - strand, within PP_0767at 886.600 kb on + strandat 886.809 kb on - strandat 886.820 kb on - strandat 886.820 kb on - strandat 886.820 kb on - strandat 886.820 kb on - strandat 886.820 kb on - strandat 886.834 kb on + strandat 886.835 kb on - strandat 886.835 kb on - strandat 886.856 kb on - strandat 886.856 kb on - strandat 886.856 kb on - strandat 886.858 kb on + strandat 886.858 kb on + strandat 886.859 kb on - strandat 886.878 kb on - strandat 886.878 kb on - strandat 886.878 kb on - strandat 886.878 kb on - strandat 886.906 kb on + strandat 886.907 kb on - strandat 886.912 kb on + strandat 886.977 kb on - strandat 887.024 kb on - strandat 887.024 kb on - strandat 887.120 kb on + strandat 887.120 kb on + strandat 887.121 kb on - strandat 887.294 kb on + strand, within PP_0768at 887.294 kb on + strand, within PP_0768at 887.412 kb on + strand, within PP_0768at 887.565 kb on + strand, within PP_0768at 887.566 kb on - strand, within PP_0768at 887.566 kb on - strand, within PP_0768at 887.567 kb on + strand, within PP_0768at 887.567 kb on + strand, within PP_0768at 887.568 kb on - strand, within PP_0768at 887.669 kb on + strand, within PP_0768

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
remove
883,169 + PP_0766 0.56 +0.6
883,169 + PP_0766 0.56 +0.1
883,170 - PP_0766 0.57 -0.9
883,215 - PP_0766 0.60 +0.2
883,249 + PP_0766 0.62 +0.1
883,249 + PP_0766 0.62 -0.7
883,250 - PP_0766 0.62 +0.5
883,325 + PP_0766 0.68 -0.4
883,325 + PP_0766 0.68 -0.4
883,325 + PP_0766 0.68 +0.5
883,326 - PP_0766 0.68 +0.0
883,326 - PP_0766 0.68 -0.3
883,326 - PP_0766 0.68 -1.5
883,370 + PP_0766 0.71 +0.4
883,371 - PP_0766 0.71 +0.8
883,443 + PP_0766 0.77 +1.4
883,444 - PP_0766 0.77 -0.6
883,444 - PP_0766 0.77 -0.7
883,478 + PP_0766 0.79 +1.1
883,478 + PP_0766 0.79 -1.7
883,479 - PP_0766 0.79 -1.3
883,479 - PP_0766 0.79 -0.7
883,479 - PP_0766 0.79 -0.1
883,497 - PP_0766 0.81 -0.4
883,539 - PP_0766 0.84 +0.2
883,589 + PP_0766 0.87 +0.7
883,589 + PP_0766 0.87 -2.7
883,589 + PP_0766 0.87 -0.0
883,590 - PP_0766 0.87 +0.4
883,592 + PP_0766 0.87 +1.1
883,592 + PP_0766 0.87 +0.1
883,592 + PP_0766 0.87 -0.9
883,592 + PP_0766 0.87 +0.1
883,592 + PP_0766 0.87 -0.2
883,593 - PP_0766 0.88 +0.5
883,593 - PP_0766 0.88 +0.6
883,613 + PP_0766 0.89 -0.8
883,613 + PP_0766 0.89 +0.7
883,613 + PP_0766 0.89 +0.3
883,614 - PP_0766 0.89 +1.1
883,614 - PP_0766 0.89 +0.1
883,631 + +0.4
883,631 + -1.6
883,632 - -0.6
883,632 - +0.4
883,653 - -0.0
883,692 - +0.5
883,860 + -0.8
883,861 - +0.6
883,926 + +0.5
883,926 + -1.2
883,927 - -0.7
883,927 - +1.7
883,999 - +0.5
884,317 + -0.0
884,317 + +0.2
884,522 - PP_0767 0.16 -0.8
884,522 - PP_0767 0.16 +0.5
884,549 + PP_0767 0.17 -0.5
884,549 + PP_0767 0.17 +1.2
884,699 - PP_0767 0.22 +0.2
884,912 + PP_0767 0.30 +0.3
884,940 + PP_0767 0.31 -0.5
885,389 + PP_0767 0.48 +0.1
885,389 + PP_0767 0.48 -0.8
885,390 - PP_0767 0.48 +0.4
885,447 - PP_0767 0.50 -0.2
885,529 - PP_0767 0.53 +0.1
885,529 - PP_0767 0.53 -0.3
885,529 - PP_0767 0.53 -1.3
885,749 + PP_0767 0.61 -0.8
885,854 + PP_0767 0.65 -0.7
885,855 - PP_0767 0.65 +0.2
885,881 + PP_0767 0.66 -0.7
885,882 - PP_0767 0.66 +0.1
885,891 - PP_0767 0.66 +0.1
886,100 + PP_0767 0.74 +1.1
886,100 + PP_0767 0.74 +2.6
886,101 - PP_0767 0.74 +0.5
886,200 - PP_0767 0.78 -0.4
886,200 - PP_0767 0.78 -0.3
886,200 - PP_0767 0.78 +0.1
886,200 - PP_0767 0.78 +0.4
886,200 - PP_0767 0.78 -0.2
886,297 + PP_0767 0.81 +1.1
886,333 - PP_0767 0.83 +1.2
886,367 - PP_0767 0.84 +0.5
886,367 - PP_0767 0.84 -0.9
886,367 - PP_0767 0.84 +0.3
886,367 - PP_0767 0.84 -0.7
886,600 + -0.4
886,809 - -0.6
886,820 - -0.9
886,820 - -1.0
886,820 - +1.2
886,820 - -0.9
886,820 - -1.1
886,834 + -0.1
886,835 - +0.7
886,835 - +0.9
886,856 - -0.0
886,856 - +1.3
886,856 - +0.1
886,858 + +0.9
886,858 + +0.5
886,859 - +1.0
886,878 - +0.7
886,878 - +0.1
886,878 - -0.7
886,878 - -0.5
886,906 + +0.7
886,907 - +0.6
886,912 + +0.5
886,977 - +0.3
887,024 - -0.7
887,024 - -0.8
887,120 + +0.8
887,120 + +0.5
887,121 - +0.2
887,294 + PP_0768 0.20 +0.7
887,294 + PP_0768 0.20 -0.4
887,412 + PP_0768 0.28 -0.1
887,565 + PP_0768 0.37 +0.5
887,566 - PP_0768 0.37 +3.1
887,566 - PP_0768 0.37 -0.2
887,567 + PP_0768 0.37 +0.2
887,567 + PP_0768 0.37 +0.0
887,568 - PP_0768 0.37 +0.6
887,669 + PP_0768 0.44 -0.7

Or see this region's nucleotide sequence