Strain Fitness in Pseudomonas putida KT2440 around PP_0710

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0709 and PP_0710 are separated by 92 nucleotidesPP_0710 and PP_0711 are separated by 211 nucleotidesPP_0711 and PP_0712 are separated by 106 nucleotides PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116 _0709 PP_0710: PP_0710 - conserved protein of unknown function, at 826,209 to 826,598 _0710 PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430 _0711 PP_0712: PP_0712 - polyphosphate kinase 2, at 827,537 to 828,352 _0712 Position (kb) 826 827Strain fitness (log2 ratio) -2 -1 0 1 2at 825.246 kb on + strand, within PP_0709at 825.247 kb on - strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.293 kb on + strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.328 kb on - strand, within PP_0709at 825.419 kb on + strand, within PP_0709at 825.420 kb on - strand, within PP_0709at 825.649 kb on + strand, within PP_0709at 825.649 kb on + strand, within PP_0709at 825.650 kb on - strand, within PP_0709at 825.650 kb on - strand, within PP_0709at 825.681 kb on - strand, within PP_0709at 825.830 kb on - strand, within PP_0709at 825.830 kb on - strand, within PP_0709at 826.141 kb on + strandat 826.142 kb on - strandat 826.199 kb on + strandat 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.374 kb on + strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.375 kb on - strand, within PP_0710at 826.410 kb on - strand, within PP_0710at 826.447 kb on + strand, within PP_0710at 826.777 kb on + strandat 826.778 kb on - strandat 826.853 kb on + strandat 826.955 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.160 kb on - strand, within PP_0711at 827.380 kb on - strandat 827.410 kb on + strandat 827.410 kb on + strandat 827.428 kb on + strandat 827.429 kb on - strandat 827.495 kb on - strandat 827.495 kb on - strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.518 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
remove
825,246 + PP_0709 0.42 -0.4
825,247 - PP_0709 0.42 +0.5
825,275 + PP_0709 0.44 +0.2
825,275 + PP_0709 0.44 +0.9
825,275 + PP_0709 0.44 +2.1
825,275 + PP_0709 0.44 -0.5
825,275 + PP_0709 0.44 -0.8
825,275 + PP_0709 0.44 +1.1
825,276 - PP_0709 0.44 +0.6
825,276 - PP_0709 0.44 +0.2
825,276 - PP_0709 0.44 -0.0
825,276 - PP_0709 0.44 -1.5
825,276 - PP_0709 0.44 -0.0
825,276 - PP_0709 0.44 -0.3
825,276 - PP_0709 0.44 +1.1
825,276 - PP_0709 0.44 -0.7
825,293 + PP_0709 0.45 -0.7
825,294 - PP_0709 0.45 -0.6
825,294 - PP_0709 0.45 -0.3
825,327 + PP_0709 0.47 -0.6
825,327 + PP_0709 0.47 -0.8
825,328 - PP_0709 0.47 +0.8
825,419 + PP_0709 0.53 +0.1
825,420 - PP_0709 0.54 -1.0
825,649 + PP_0709 0.69 +0.8
825,649 + PP_0709 0.69 +1.1
825,650 - PP_0709 0.69 -0.5
825,650 - PP_0709 0.69 -1.4
825,681 - PP_0709 0.71 -0.7
825,830 - PP_0709 0.81 +1.4
825,830 - PP_0709 0.81 +0.7
826,141 + -0.5
826,142 - -0.8
826,199 + +0.0
826,374 + PP_0710 0.42 -0.6
826,374 + PP_0710 0.42 -0.9
826,374 + PP_0710 0.42 +0.1
826,374 + PP_0710 0.42 -1.3
826,374 + PP_0710 0.42 -1.9
826,374 + PP_0710 0.42 -1.0
826,374 + PP_0710 0.42 +1.3
826,375 - PP_0710 0.43 -1.6
826,375 - PP_0710 0.43 -1.6
826,375 - PP_0710 0.43 -1.7
826,375 - PP_0710 0.43 -1.3
826,375 - PP_0710 0.43 -0.7
826,410 - PP_0710 0.52 +0.8
826,447 + PP_0710 0.61 +0.2
826,777 + +0.1
826,778 - +0.2
826,853 + +2.5
826,955 - PP_0711 0.23 -0.3
827,160 - PP_0711 0.56 -0.2
827,160 - PP_0711 0.56 +0.3
827,160 - PP_0711 0.56 -0.3
827,160 - PP_0711 0.56 +0.4
827,380 - +0.6
827,410 + -0.5
827,410 + +0.2
827,428 + +2.1
827,429 - -1.2
827,495 - +0.3
827,495 - -0.3
827,504 + -0.2
827,504 + -0.9
827,504 + +2.1
827,504 + +0.7
827,518 + -0.4

Or see this region's nucleotide sequence