Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3821 and Atu3822 are separated by 128 nucleotides Atu3822 and Atu3823 are separated by 21 nucleotides
Atu3821: Atu3821 - ribose ABC transporter substrate-binding protein, at 917,805 to 918,734
Atu3821
Atu3822: Atu3822 - hypothetical protein, at 918,863 to 919,348
Atu3822
Atu3823: Atu3823 - 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase, at 919,370 to 920,398
Atu3823
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1 at 917.867 kb on + strand at 917.867 kb on + strand at 917.867 kb on + strand at 917.875 kb on - strand at 917.877 kb on + strand at 917.916 kb on - strand, within Atu3821 at 917.959 kb on + strand, within Atu3821 at 917.967 kb on - strand, within Atu3821 at 918.014 kb on + strand, within Atu3821 at 918.082 kb on - strand, within Atu3821 at 918.098 kb on + strand, within Atu3821 at 918.106 kb on - strand, within Atu3821 at 918.153 kb on + strand, within Atu3821 at 918.246 kb on + strand, within Atu3821 at 918.413 kb on - strand, within Atu3821 at 918.441 kb on + strand, within Atu3821 at 918.465 kb on - strand, within Atu3821 at 918.578 kb on - strand, within Atu3821 at 918.596 kb on + strand, within Atu3821 at 918.642 kb on + strand at 918.642 kb on + strand at 918.642 kb on + strand at 918.669 kb on + strand at 918.754 kb on + strand at 918.774 kb on + strand at 918.810 kb on + strand at 918.840 kb on - strand at 918.986 kb on + strand, within Atu3822 at 919.022 kb on - strand, within Atu3822 at 919.046 kb on - strand, within Atu3822 at 919.112 kb on - strand, within Atu3822 at 919.233 kb on + strand, within Atu3822 at 919.265 kb on + strand, within Atu3822 at 919.280 kb on - strand, within Atu3822 at 919.343 kb on - strand at 919.357 kb on + strand at 919.365 kb on - strand at 919.375 kb on - strand at 919.389 kb on - strand at 919.411 kb on - strand at 919.424 kb on - strand at 919.451 kb on - strand at 919.476 kb on + strand, within Atu3823 at 919.484 kb on - strand, within Atu3823 at 919.510 kb on - strand, within Atu3823 at 919.519 kb on + strand, within Atu3823 at 919.546 kb on + strand, within Atu3823 at 919.597 kb on + strand, within Atu3823 at 919.632 kb on - strand, within Atu3823 at 919.682 kb on - strand, within Atu3823 at 919.705 kb on + strand, within Atu3823 at 919.713 kb on - strand, within Atu3823 at 919.742 kb on - strand, within Atu3823 at 919.821 kb on + strand, within Atu3823 at 919.834 kb on - strand, within Atu3823 at 919.835 kb on - strand, within Atu3823 at 919.881 kb on - strand, within Atu3823 at 919.978 kb on - strand, within Atu3823 at 919.986 kb on - strand, within Atu3823 at 920.137 kb on - strand, within Atu3823
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 917,867 + +0.7 917,867 + +0.4 917,867 + +0.0 917,875 - +0.1 917,877 + +1.4 917,916 - Atu3821 0.12 +0.4 917,959 + Atu3821 0.17 -0.2 917,967 - Atu3821 0.17 +1.1 918,014 + Atu3821 0.22 +0.4 918,082 - Atu3821 0.30 +0.0 918,098 + Atu3821 0.32 -0.1 918,106 - Atu3821 0.32 +0.3 918,153 + Atu3821 0.37 -0.3 918,246 + Atu3821 0.47 -0.4 918,413 - Atu3821 0.65 -0.1 918,441 + Atu3821 0.68 -0.6 918,465 - Atu3821 0.71 -0.2 918,578 - Atu3821 0.83 +1.0 918,596 + Atu3821 0.85 -0.1 918,642 + -0.6 918,642 + -0.4 918,642 + -0.6 918,669 + +1.0 918,754 + +0.9 918,774 + +0.9 918,810 + +0.1 918,840 - +0.2 918,986 + Atu3822 0.25 +0.8 919,022 - Atu3822 0.33 -0.3 919,046 - Atu3822 0.38 -1.0 919,112 - Atu3822 0.51 -1.0 919,233 + Atu3822 0.76 +0.1 919,265 + Atu3822 0.83 -0.7 919,280 - Atu3822 0.86 -1.8 919,343 - -0.2 919,357 + +0.3 919,365 - +0.1 919,375 - -1.5 919,389 - -1.0 919,411 - +0.5 919,424 - -0.8 919,451 - -0.5 919,476 + Atu3823 0.10 +0.2 919,484 - Atu3823 0.11 +0.3 919,510 - Atu3823 0.14 -1.1 919,519 + Atu3823 0.14 +0.1 919,546 + Atu3823 0.17 -0.1 919,597 + Atu3823 0.22 +0.4 919,632 - Atu3823 0.25 -1.0 919,682 - Atu3823 0.30 -0.1 919,705 + Atu3823 0.33 +1.2 919,713 - Atu3823 0.33 +0.6 919,742 - Atu3823 0.36 +0.2 919,821 + Atu3823 0.44 -0.1 919,834 - Atu3823 0.45 -0.8 919,835 - Atu3823 0.45 -0.6 919,881 - Atu3823 0.50 -0.3 919,978 - Atu3823 0.59 +0.4 919,986 - Atu3823 0.60 +0.8 920,137 - Atu3823 0.75 +0.1
Or see this region's nucleotide sequence