Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3790 and Atu3791 are separated by 552 nucleotides Atu3791 and Atu3792 overlap by 4 nucleotides
Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710
Atu3790
Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216
Atu3791
Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670
Atu3792
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 882.269 kb on - strand, within Atu3790 at 882.319 kb on + strand, within Atu3790 at 882.319 kb on + strand, within Atu3790 at 882.332 kb on - strand, within Atu3790 at 882.428 kb on + strand, within Atu3790 at 882.488 kb on - strand, within Atu3790 at 882.510 kb on + strand, within Atu3790 at 882.525 kb on + strand, within Atu3790 at 882.550 kb on - strand at 882.558 kb on + strand at 882.558 kb on + strand at 882.560 kb on - strand at 882.566 kb on - strand at 882.654 kb on - strand at 882.654 kb on - strand at 882.712 kb on + strand at 882.712 kb on - strand at 882.784 kb on + strand at 882.848 kb on + strand at 882.911 kb on + strand at 882.919 kb on - strand at 882.919 kb on - strand at 882.919 kb on - strand at 882.945 kb on + strand at 882.953 kb on - strand at 882.968 kb on + strand at 882.987 kb on + strand at 883.116 kb on + strand at 883.161 kb on + strand at 883.231 kb on - strand at 883.307 kb on - strand at 883.347 kb on + strand at 883.347 kb on + strand at 883.350 kb on - strand at 883.355 kb on - strand at 883.372 kb on - strand, within Atu3791 at 883.434 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.517 kb on - strand, within Atu3791 at 883.524 kb on - strand, within Atu3791 at 883.576 kb on - strand, within Atu3791 at 883.627 kb on + strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.677 kb on - strand, within Atu3791 at 883.784 kb on - strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.909 kb on + strand, within Atu3791 at 883.942 kb on + strand, within Atu3791 at 884.036 kb on - strand, within Atu3791 at 884.037 kb on + strand, within Atu3791 at 884.038 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.073 kb on - strand, within Atu3791 at 884.080 kb on - strand, within Atu3791 at 884.108 kb on - strand, within Atu3791 at 884.120 kb on + strand, within Atu3791 at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.205 kb on - strand at 884.205 kb on - strand at 884.224 kb on + strand at 884.224 kb on + strand at 884.275 kb on + strand at 884.280 kb on - strand at 884.407 kb on - strand, within Atu3792 at 884.532 kb on - strand, within Atu3792 at 884.552 kb on + strand, within Atu3792 at 884.572 kb on - strand, within Atu3792 at 884.625 kb on - strand, within Atu3792 at 884.743 kb on - strand, within Atu3792 at 884.778 kb on - strand, within Atu3792 at 884.810 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.842 kb on - strand, within Atu3792 at 884.922 kb on - strand, within Atu3792 at 884.937 kb on - strand, within Atu3792 at 884.986 kb on - strand, within Atu3792 at 885.134 kb on + strand, within Atu3792 at 885.151 kb on + strand, within Atu3792 at 885.154 kb on - strand, within Atu3792
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 882,269 - Atu3790 0.74 +0.6 882,319 + Atu3790 0.77 -0.4 882,319 + Atu3790 0.77 +0.5 882,332 - Atu3790 0.78 -0.9 882,428 + Atu3790 0.83 -0.3 882,488 - Atu3790 0.87 -0.4 882,510 + Atu3790 0.88 -0.5 882,525 + Atu3790 0.89 -0.5 882,550 - +0.1 882,558 + -0.5 882,558 + +2.0 882,560 - -0.2 882,566 - +0.2 882,654 - -1.0 882,654 - -0.6 882,712 + +0.4 882,712 - +0.1 882,784 + +3.0 882,848 + +0.5 882,911 + -0.8 882,919 - -1.9 882,919 - -0.3 882,919 - -0.9 882,945 + -1.1 882,953 - -0.0 882,968 + -0.4 882,987 + -0.6 883,116 + -0.2 883,161 + +0.1 883,231 - -0.3 883,307 - +0.4 883,347 + +1.6 883,347 + -0.0 883,350 - +0.7 883,355 - +1.2 883,372 - Atu3791 0.11 +0.4 883,434 - Atu3791 0.18 +0.1 883,489 - Atu3791 0.24 +1.6 883,489 - Atu3791 0.24 +0.4 883,517 - Atu3791 0.27 +0.9 883,524 - Atu3791 0.27 +0.8 883,576 - Atu3791 0.33 +0.8 883,627 + Atu3791 0.38 +1.7 883,635 - Atu3791 0.39 +0.0 883,635 - Atu3791 0.39 +1.6 883,677 - Atu3791 0.43 +0.3 883,784 - Atu3791 0.55 +3.1 883,885 + Atu3791 0.65 +1.9 883,885 + Atu3791 0.65 +1.4 883,909 + Atu3791 0.68 +1.0 883,942 + Atu3791 0.71 +1.6 884,036 - Atu3791 0.81 +1.3 884,037 + Atu3791 0.81 +1.6 884,038 + Atu3791 0.81 +1.8 884,065 + Atu3791 0.84 +1.0 884,065 + Atu3791 0.84 +0.6 884,065 + Atu3791 0.84 +0.7 884,073 - Atu3791 0.85 +0.6 884,080 - Atu3791 0.86 +0.5 884,108 - Atu3791 0.89 +0.8 884,120 + Atu3791 0.90 +0.3 884,197 + +2.4 884,197 + -0.5 884,197 + +0.0 884,197 + +0.2 884,205 - +0.4 884,205 - +0.6 884,224 + -1.0 884,224 + -1.1 884,275 + +0.7 884,280 - +1.0 884,407 - Atu3792 0.13 -1.0 884,532 - Atu3792 0.22 -1.0 884,552 + Atu3792 0.23 +3.6 884,572 - Atu3792 0.25 -1.2 884,625 - Atu3792 0.28 -0.4 884,743 - Atu3792 0.36 -0.0 884,778 - Atu3792 0.39 -0.6 884,810 - Atu3792 0.41 -0.8 884,837 - Atu3792 0.43 -0.8 884,837 - Atu3792 0.43 -0.9 884,842 - Atu3792 0.43 -2.2 884,922 - Atu3792 0.49 +0.5 884,937 - Atu3792 0.50 -0.9 884,986 - Atu3792 0.53 +1.2 885,134 + Atu3792 0.63 -0.6 885,151 + Atu3792 0.64 -1.6 885,154 - Atu3792 0.65 -0.3
Or see this region's nucleotide sequence