Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3230 and Atu8184 are separated by 157 nucleotides Atu8184 and Atu3232 overlap by 4 nucleotides Atu3232 and Atu8185 are separated by 104 nucleotides Atu8185 and Atu3234 are separated by 111 nucleotides
Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801
Atu3230
Atu8184: Atu8184 - hypothetical protein, at 247,959 to 248,372
Atu8184
Atu3232: Atu3232 - hydroxypyruvate reductase, at 248,369 to 249,649
Atu3232
Atu8185: Atu8185 - hypothetical protein, at 249,754 to 250,017
Atu8185
Atu3234: Atu3234 - NAD binding oxidoreductase, at 250,129 to 251,316
Atu3234
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 247.426 kb on - strand, within Atu3230 at 247.485 kb on + strand, within Atu3230 at 247.528 kb on - strand, within Atu3230 at 247.533 kb on - strand, within Atu3230 at 247.544 kb on + strand, within Atu3230 at 247.552 kb on - strand, within Atu3230 at 247.637 kb on - strand, within Atu3230 at 247.645 kb on + strand, within Atu3230 at 247.731 kb on - strand at 247.742 kb on - strand at 247.870 kb on + strand at 247.899 kb on - strand at 248.010 kb on - strand, within Atu8184 at 248.180 kb on - strand, within Atu8184 at 248.212 kb on + strand, within Atu8184 at 248.240 kb on - strand, within Atu8184 at 248.266 kb on - strand, within Atu8184 at 248.342 kb on - strand at 248.392 kb on - strand at 248.487 kb on + strand at 248.583 kb on + strand, within Atu3232 at 248.791 kb on - strand, within Atu3232 at 248.881 kb on + strand, within Atu3232 at 248.881 kb on + strand, within Atu3232 at 248.889 kb on - strand, within Atu3232 at 248.925 kb on - strand, within Atu3232 at 248.964 kb on + strand, within Atu3232 at 249.045 kb on - strand, within Atu3232 at 249.082 kb on + strand, within Atu3232 at 249.164 kb on + strand, within Atu3232 at 249.289 kb on + strand, within Atu3232 at 249.310 kb on + strand, within Atu3232 at 249.398 kb on - strand, within Atu3232 at 249.457 kb on - strand, within Atu3232 at 249.552 kb on - strand at 249.693 kb on + strand at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.813 kb on - strand, within Atu8185 at 250.083 kb on - strand at 250.201 kb on - strand at 250.229 kb on + strand at 250.229 kb on + strand at 250.230 kb on + strand at 250.283 kb on + strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.520 kb on - strand, within Atu3234 at 250.522 kb on + strand, within Atu3234 at 250.612 kb on + strand, within Atu3234 at 250.620 kb on - strand, within Atu3234
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 247,426 - Atu3230 0.51 -0.1 247,485 + Atu3230 0.59 -0.2 247,528 - Atu3230 0.64 +0.6 247,533 - Atu3230 0.65 +0.2 247,544 + Atu3230 0.66 -0.2 247,552 - Atu3230 0.67 +0.3 247,637 - Atu3230 0.78 +0.5 247,645 + Atu3230 0.79 +1.4 247,731 - -1.3 247,742 - +0.7 247,870 + -0.1 247,899 - -0.4 248,010 - Atu8184 0.12 -0.9 248,180 - Atu8184 0.53 +0.3 248,212 + Atu8184 0.61 +1.2 248,240 - Atu8184 0.68 +0.7 248,266 - Atu8184 0.74 -0.3 248,342 - +0.2 248,392 - -0.1 248,487 + +0.6 248,583 + Atu3232 0.17 -0.9 248,791 - Atu3232 0.33 +0.8 248,881 + Atu3232 0.40 -0.5 248,881 + Atu3232 0.40 -1.4 248,889 - Atu3232 0.41 -0.0 248,925 - Atu3232 0.43 -0.2 248,964 + Atu3232 0.46 -0.3 249,045 - Atu3232 0.53 -0.3 249,082 + Atu3232 0.56 -0.4 249,164 + Atu3232 0.62 -1.7 249,289 + Atu3232 0.72 -0.0 249,310 + Atu3232 0.73 +0.1 249,398 - Atu3232 0.80 -0.4 249,457 - Atu3232 0.85 +1.1 249,552 - -0.3 249,693 + -2.1 249,781 - Atu8185 0.10 -0.5 249,781 - Atu8185 0.10 -0.7 249,781 - Atu8185 0.10 -0.6 249,813 - Atu8185 0.22 -0.6 250,083 - -0.3 250,201 - -0.7 250,229 + -0.1 250,229 + -0.4 250,230 + +5.8 250,283 + Atu3234 0.13 -0.2 250,291 - Atu3234 0.14 -0.5 250,291 - Atu3234 0.14 -0.3 250,520 - Atu3234 0.33 +1.2 250,522 + Atu3234 0.33 +1.8 250,612 + Atu3234 0.41 +0.8 250,620 - Atu3234 0.41 -0.2
Or see this region's nucleotide sequence