Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2697 and Atu2698 are separated by 11 nucleotides Atu2698 and Atu2699 are separated by 33 nucleotides Atu2699 and Atu2700 are separated by 148 nucleotides Atu2700 and Atu2701 are separated by 4 nucleotides Atu2701 and Atu2702 overlap by 19 nucleotides
Atu2697: Atu2697 - signal recognition particle protein, at 2,682,032 to 2,683,603
Atu2697
Atu2698: Atu2698 - chorismate mutase, at 2,683,615 to 2,683,932
Atu2698
Atu2699: Atu2699 - 30S ribosomal protein S16, at 2,683,966 to 2,684,346
Atu2699
Atu2700: Atu2700 - 16S rRNA processing protein, at 2,684,495 to 2,685,034
Atu2700
Atu2701: Atu2701 - tRNA (guanine-N(1)-)-methyltransferase, at 2,685,039 to 2,685,737
Atu2701
Atu2702: Atu2702 - hypothetical protein, at 2,685,719 to 2,686,465
Atu2702
Position (kb)
2684
2685
2686 Strain fitness (log2 ratio)
-1
0
1 at 2684.426 kb on + strand at 2684.442 kb on + strand at 2685.748 kb on + strand at 2685.756 kb on - strand at 2685.799 kb on + strand, within Atu2702 at 2685.817 kb on - strand, within Atu2702 at 2686.009 kb on - strand, within Atu2702
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 2,684,426 + +0.4 2,684,442 + +0.7 2,685,748 + -0.0 2,685,756 - -0.7 2,685,799 + Atu2702 0.11 -1.1 2,685,817 - Atu2702 0.13 -0.3 2,686,009 - Atu2702 0.39 +0.1
Or see this region's nucleotide sequence