Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0667 and Atu0668 overlap by 4 nucleotides Atu0668 and Atu0669 are separated by 259 nucleotides Atu0669 and Atu0670 are separated by 238 nucleotides Atu0670 and Atu8085 overlap by 4 nucleotides
Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392
Atu0667
Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048
Atu0668
Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084
Atu0669
Atu0670: Atu0670 - 3-methyladenine-DNA glycosylase, at 666,323 to 666,952
Atu0670
Atu8085: Atu8085 - hypothetical protein, at 666,949 to 667,392
Atu8085
Position (kb) 665
666
667 Strain fitness (log2 ratio) -1
0
1
2
3 at 664.322 kb on - strand at 664.342 kb on + strand at 664.489 kb on + strand, within Atu0668 at 664.499 kb on - strand, within Atu0668 at 664.507 kb on - strand, within Atu0668 at 664.537 kb on + strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.715 kb on - strand, within Atu0668 at 664.768 kb on + strand, within Atu0668 at 664.784 kb on + strand, within Atu0668 at 664.860 kb on - strand, within Atu0668 at 665.010 kb on + strand at 665.146 kb on + strand at 665.177 kb on + strand at 665.255 kb on + strand at 665.324 kb on - strand at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.448 kb on - strand, within Atu0669 at 665.482 kb on - strand, within Atu0669 at 665.507 kb on + strand, within Atu0669 at 665.540 kb on - strand, within Atu0669 at 665.560 kb on + strand, within Atu0669 at 665.568 kb on - strand, within Atu0669 at 665.600 kb on + strand, within Atu0669 at 665.600 kb on - strand, within Atu0669 at 665.608 kb on - strand, within Atu0669 at 665.644 kb on + strand, within Atu0669 at 665.901 kb on - strand, within Atu0669 at 666.254 kb on + strand at 666.278 kb on + strand at 666.278 kb on + strand at 666.303 kb on + strand at 666.309 kb on - strand at 666.377 kb on - strand at 666.415 kb on + strand, within Atu0670 at 666.423 kb on - strand, within Atu0670 at 666.429 kb on - strand, within Atu0670 at 666.460 kb on + strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.511 kb on - strand, within Atu0670 at 666.577 kb on + strand, within Atu0670 at 666.579 kb on + strand, within Atu0670 at 666.703 kb on + strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.765 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.873 kb on - strand, within Atu0670 at 666.876 kb on - strand, within Atu0670 at 667.063 kb on - strand, within Atu8085 at 667.063 kb on - strand, within Atu8085
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 664,322 - -0.8 664,342 + +0.5 664,489 + Atu0668 0.15 +1.0 664,499 - Atu0668 0.17 +0.2 664,507 - Atu0668 0.18 -0.2 664,537 + Atu0668 0.22 -0.2 664,654 - Atu0668 0.40 +0.4 664,654 - Atu0668 0.40 -1.7 664,715 - Atu0668 0.49 +0.3 664,768 + Atu0668 0.57 -0.9 664,784 + Atu0668 0.60 +1.5 664,860 - Atu0668 0.71 +0.5 665,010 + -0.0 665,146 + +0.0 665,177 + +0.5 665,255 + -0.1 665,324 - -0.2 665,416 + Atu0669 0.14 -0.8 665,416 + Atu0669 0.14 -0.3 665,416 + Atu0669 0.14 +3.2 665,429 - Atu0669 0.16 -0.1 665,429 - Atu0669 0.16 +0.6 665,448 - Atu0669 0.18 -0.5 665,482 - Atu0669 0.22 +1.2 665,507 + Atu0669 0.26 -0.1 665,540 - Atu0669 0.30 +0.1 665,560 + Atu0669 0.32 -0.7 665,568 - Atu0669 0.33 +0.0 665,600 + Atu0669 0.38 +2.6 665,600 - Atu0669 0.38 -0.2 665,608 - Atu0669 0.39 +1.6 665,644 + Atu0669 0.43 +0.3 665,901 - Atu0669 0.76 +2.1 666,254 + +0.9 666,278 + +1.0 666,278 + -0.2 666,303 + -1.2 666,309 - -0.3 666,377 - +1.6 666,415 + Atu0670 0.15 +0.7 666,423 - Atu0670 0.16 -0.1 666,429 - Atu0670 0.17 +2.4 666,460 + Atu0670 0.22 -0.5 666,506 - Atu0670 0.29 -0.5 666,506 - Atu0670 0.29 +1.9 666,511 - Atu0670 0.30 +1.0 666,577 + Atu0670 0.40 +1.6 666,579 + Atu0670 0.41 -1.3 666,703 + Atu0670 0.60 -0.1 666,752 - Atu0670 0.68 +1.4 666,752 - Atu0670 0.68 -0.0 666,765 + Atu0670 0.70 -0.9 666,865 + Atu0670 0.86 +0.0 666,865 + Atu0670 0.86 -0.7 666,873 - Atu0670 0.87 +0.5 666,876 - Atu0670 0.88 +0.5 667,063 - Atu8085 0.26 +0.2 667,063 - Atu8085 0.26 +0.0
Or see this region's nucleotide sequence