Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5176 and Atu5177 are separated by 246 nucleotides Atu5177 and Atu5178 are separated by 9 nucleotides
Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578
Atu5176
Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018
Atu5177
Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974
Atu5178
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 172.835 kb on + strand, within Atu5176 at 172.862 kb on + strand, within Atu5176 at 172.994 kb on - strand, within Atu5176 at 172.999 kb on + strand, within Atu5176 at 172.999 kb on - strand, within Atu5176 at 173.025 kb on + strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.042 kb on - strand, within Atu5176 at 173.092 kb on - strand, within Atu5176 at 173.143 kb on - strand, within Atu5176 at 173.294 kb on + strand, within Atu5176 at 173.306 kb on + strand, within Atu5176 at 173.330 kb on - strand, within Atu5176 at 173.411 kb on - strand, within Atu5176 at 173.419 kb on - strand, within Atu5176 at 173.436 kb on + strand, within Atu5176 at 173.442 kb on - strand, within Atu5176 at 173.444 kb on - strand at 173.458 kb on + strand at 173.458 kb on + strand at 173.463 kb on - strand at 173.508 kb on + strand at 173.547 kb on + strand at 173.574 kb on + strand at 173.872 kb on + strand at 174.115 kb on + strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.123 kb on - strand, within Atu5177 at 174.148 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.154 kb on + strand, within Atu5177 at 174.162 kb on - strand, within Atu5177 at 174.190 kb on + strand, within Atu5177 at 174.205 kb on - strand, within Atu5177 at 174.248 kb on - strand, within Atu5177 at 174.249 kb on + strand, within Atu5177 at 174.278 kb on + strand, within Atu5177 at 174.288 kb on - strand, within Atu5177 at 174.309 kb on - strand, within Atu5177 at 174.331 kb on + strand, within Atu5177 at 174.348 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.362 kb on + strand, within Atu5177 at 174.374 kb on + strand, within Atu5177 at 174.445 kb on + strand, within Atu5177 at 174.451 kb on - strand, within Atu5177 at 174.489 kb on + strand, within Atu5177 at 174.497 kb on - strand, within Atu5177 at 174.606 kb on + strand, within Atu5177 at 174.625 kb on - strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.685 kb on + strand, within Atu5177 at 174.693 kb on - strand, within Atu5177 at 174.695 kb on + strand, within Atu5177 at 174.744 kb on - strand, within Atu5177 at 174.744 kb on - strand, within Atu5177 at 174.761 kb on + strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.769 kb on - strand, within Atu5177 at 174.801 kb on + strand, within Atu5177 at 174.801 kb on + strand, within Atu5177 at 174.809 kb on - strand, within Atu5177 at 174.817 kb on + strand, within Atu5177 at 174.869 kb on + strand, within Atu5177 at 174.869 kb on + strand, within Atu5177 at 174.884 kb on + strand, within Atu5177 at 174.892 kb on - strand, within Atu5177 at 174.892 kb on - strand, within Atu5177 at 174.938 kb on - strand at 174.949 kb on - strand at 174.983 kb on - strand at 175.026 kb on - strand at 175.064 kb on - strand at 175.144 kb on - strand at 175.188 kb on + strand at 175.243 kb on - strand, within Atu5178 at 175.314 kb on + strand, within Atu5178 at 175.373 kb on + strand, within Atu5178 at 175.376 kb on - strand, within Atu5178 at 175.401 kb on - strand, within Atu5178 at 175.462 kb on + strand, within Atu5178 at 175.497 kb on + strand, within Atu5178 at 175.521 kb on + strand, within Atu5178 at 175.569 kb on - strand, within Atu5178 at 175.577 kb on + strand, within Atu5178 at 175.617 kb on + strand, within Atu5178 at 175.629 kb on - strand, within Atu5178 at 175.720 kb on + strand, within Atu5178 at 175.771 kb on - strand, within Atu5178 at 175.771 kb on - strand, within Atu5178 at 175.852 kb on - strand, within Atu5178 at 175.933 kb on - strand, within Atu5178 at 175.943 kb on - strand, within Atu5178 at 175.962 kb on - strand, within Atu5178 at 175.975 kb on - strand, within Atu5178 at 175.990 kb on - strand, within Atu5178
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 172,835 + Atu5176 0.45 -0.1 172,862 + Atu5176 0.47 +1.3 172,994 - Atu5176 0.57 +0.5 172,999 + Atu5176 0.57 -1.1 172,999 - Atu5176 0.57 +0.5 173,025 + Atu5176 0.59 +0.3 173,033 - Atu5176 0.60 +0.6 173,033 - Atu5176 0.60 +1.1 173,033 - Atu5176 0.60 -1.3 173,042 - Atu5176 0.60 +1.1 173,092 - Atu5176 0.64 +0.5 173,143 - Atu5176 0.68 +0.2 173,294 + Atu5176 0.79 -0.9 173,306 + Atu5176 0.80 -0.2 173,330 - Atu5176 0.82 +3.7 173,411 - Atu5176 0.88 -0.2 173,419 - Atu5176 0.88 +2.1 173,436 + Atu5176 0.89 +0.7 173,442 - Atu5176 0.90 +0.6 173,444 - -0.2 173,458 + -0.6 173,458 + +0.1 173,463 - -0.6 173,508 + -0.4 173,547 + -0.6 173,574 + +0.1 173,872 + +1.0 174,115 + Atu5177 0.24 +1.3 174,123 - Atu5177 0.25 +0.1 174,123 - Atu5177 0.25 -0.6 174,148 + Atu5177 0.27 -0.9 174,154 + Atu5177 0.28 +1.7 174,154 + Atu5177 0.28 -1.2 174,162 - Atu5177 0.28 +0.0 174,190 + Atu5177 0.31 +0.5 174,205 - Atu5177 0.32 +0.4 174,248 - Atu5177 0.35 +0.1 174,249 + Atu5177 0.36 +0.1 174,278 + Atu5177 0.38 +0.2 174,288 - Atu5177 0.39 +0.8 174,309 - Atu5177 0.41 -1.3 174,331 + Atu5177 0.42 -1.1 174,348 + Atu5177 0.44 +0.9 174,362 + Atu5177 0.45 +1.1 174,362 + Atu5177 0.45 +0.1 174,374 + Atu5177 0.46 -0.3 174,445 + Atu5177 0.52 +1.0 174,451 - Atu5177 0.52 -0.5 174,489 + Atu5177 0.56 -1.1 174,497 - Atu5177 0.56 +0.5 174,606 + Atu5177 0.65 +1.7 174,625 - Atu5177 0.67 -0.4 174,685 + Atu5177 0.72 +0.3 174,685 + Atu5177 0.72 +0.2 174,685 + Atu5177 0.72 -0.3 174,685 + Atu5177 0.72 -0.1 174,685 + Atu5177 0.72 +0.2 174,685 + Atu5177 0.72 -0.0 174,693 - Atu5177 0.73 -0.1 174,695 + Atu5177 0.73 +5.1 174,744 - Atu5177 0.77 -0.5 174,744 - Atu5177 0.77 -1.0 174,761 + Atu5177 0.78 +1.1 174,769 - Atu5177 0.79 -0.4 174,769 - Atu5177 0.79 -0.0 174,769 - Atu5177 0.79 +0.4 174,801 + Atu5177 0.82 +0.0 174,801 + Atu5177 0.82 +0.8 174,809 - Atu5177 0.82 -0.5 174,817 + Atu5177 0.83 -0.0 174,869 + Atu5177 0.87 +0.1 174,869 + Atu5177 0.87 +0.8 174,884 + Atu5177 0.89 -1.5 174,892 - Atu5177 0.89 -0.2 174,892 - Atu5177 0.89 +0.3 174,938 - +0.7 174,949 - +0.2 174,983 - -0.7 175,026 - -0.0 175,064 - -0.5 175,144 - -0.4 175,188 + -0.5 175,243 - Atu5178 0.11 -0.2 175,314 + Atu5178 0.15 +1.0 175,373 + Atu5178 0.18 +1.3 175,376 - Atu5178 0.18 +3.0 175,401 - Atu5178 0.19 -0.1 175,462 + Atu5178 0.22 -1.0 175,497 + Atu5178 0.24 +0.4 175,521 + Atu5178 0.25 +0.7 175,569 - Atu5178 0.28 +0.7 175,577 + Atu5178 0.28 +0.1 175,617 + Atu5178 0.30 +0.2 175,629 - Atu5178 0.31 -0.8 175,720 + Atu5178 0.36 +0.2 175,771 - Atu5178 0.38 -0.1 175,771 - Atu5178 0.38 +0.7 175,852 - Atu5178 0.42 +0.7 175,933 - Atu5178 0.46 -0.5 175,943 - Atu5178 0.47 +1.7 175,962 - Atu5178 0.48 +0.6 175,975 - Atu5178 0.49 -0.3 175,990 - Atu5178 0.49 +1.3
Or see this region's nucleotide sequence