Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8113 and Atu3572 are separated by 126 nucleotides Atu3572 and Atu3573 are separated by 28 nucleotides Atu3573 and Atu3574 are separated by 202 nucleotides
Atu8113: Atu8113 - hypothetical protein, at 625,388 to 626,539
Atu8113
Atu3572: Atu3572 - transcriptional regulator, at 626,666 to 627,103
Atu3572
Atu3573: Atu3573 - hypothetical protein, at 627,132 to 627,431
Atu3573
Atu3574: Atu3574 - xylose ABC transporter ATPase, at 627,634 to 628,416
Atu3574
Position (kb) 627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 626.361 kb on - strand, within Atu8113 at 626.385 kb on + strand, within Atu8113 at 626.393 kb on - strand, within Atu8113 at 626.426 kb on + strand at 626.434 kb on - strand at 626.434 kb on - strand at 626.461 kb on - strand at 626.486 kb on + strand at 626.496 kb on + strand at 626.562 kb on + strand at 626.694 kb on + strand at 626.713 kb on + strand, within Atu3572 at 626.739 kb on + strand, within Atu3572 at 626.747 kb on - strand, within Atu3572 at 626.778 kb on + strand, within Atu3572 at 626.786 kb on - strand, within Atu3572 at 626.789 kb on + strand, within Atu3572 at 626.834 kb on + strand, within Atu3572 at 626.846 kb on + strand, within Atu3572 at 626.854 kb on - strand, within Atu3572 at 626.896 kb on + strand, within Atu3572 at 626.937 kb on - strand, within Atu3572 at 626.995 kb on + strand, within Atu3572 at 627.103 kb on + strand at 627.108 kb on + strand at 627.108 kb on + strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.149 kb on - strand at 627.303 kb on - strand, within Atu3573 at 627.333 kb on + strand, within Atu3573 at 627.338 kb on + strand, within Atu3573 at 627.378 kb on - strand, within Atu3573 at 627.380 kb on + strand, within Atu3573 at 627.388 kb on - strand, within Atu3573 at 627.398 kb on - strand, within Atu3573 at 627.416 kb on + strand at 627.416 kb on + strand at 627.471 kb on + strand at 627.610 kb on + strand at 627.628 kb on - strand at 627.720 kb on + strand, within Atu3574 at 627.857 kb on + strand, within Atu3574 at 627.923 kb on - strand, within Atu3574 at 627.923 kb on - strand, within Atu3574 at 627.936 kb on - strand, within Atu3574 at 627.942 kb on + strand, within Atu3574 at 627.964 kb on - strand, within Atu3574 at 627.969 kb on - strand, within Atu3574 at 628.032 kb on - strand, within Atu3574 at 628.039 kb on + strand, within Atu3574 at 628.070 kb on - strand, within Atu3574 at 628.145 kb on - strand, within Atu3574 at 628.259 kb on + strand, within Atu3574 at 628.259 kb on + strand, within Atu3574 at 628.260 kb on - strand, within Atu3574 at 628.267 kb on - strand, within Atu3574 at 628.311 kb on - strand, within Atu3574 at 628.404 kb on - strand at 628.405 kb on - strand at 628.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 626,361 - Atu8113 0.84 -0.3 626,385 + Atu8113 0.87 +1.0 626,393 - Atu8113 0.87 -1.8 626,426 + -0.6 626,434 - -1.3 626,434 - -0.9 626,461 - +1.3 626,486 + -0.2 626,496 + -0.1 626,562 + +0.7 626,694 + -0.7 626,713 + Atu3572 0.11 -2.4 626,739 + Atu3572 0.17 +0.2 626,747 - Atu3572 0.18 -0.9 626,778 + Atu3572 0.26 -0.3 626,786 - Atu3572 0.27 -1.9 626,789 + Atu3572 0.28 -1.5 626,834 + Atu3572 0.38 -0.9 626,846 + Atu3572 0.41 -0.3 626,854 - Atu3572 0.43 -0.2 626,896 + Atu3572 0.53 -0.1 626,937 - Atu3572 0.62 -0.7 626,995 + Atu3572 0.75 -1.3 627,103 + -0.6 627,108 + +0.5 627,108 + -1.1 627,116 - -0.7 627,116 - +0.5 627,116 - -0.8 627,149 - -0.0 627,303 - Atu3573 0.57 -0.3 627,333 + Atu3573 0.67 -0.8 627,338 + Atu3573 0.69 -0.9 627,378 - Atu3573 0.82 -0.3 627,380 + Atu3573 0.83 -0.6 627,388 - Atu3573 0.85 +0.2 627,398 - Atu3573 0.89 -1.0 627,416 + -0.5 627,416 + +0.9 627,471 + -0.1 627,610 + -0.1 627,628 - +0.0 627,720 + Atu3574 0.11 +2.3 627,857 + Atu3574 0.28 -0.5 627,923 - Atu3574 0.37 +1.6 627,923 - Atu3574 0.37 +0.2 627,936 - Atu3574 0.39 +1.0 627,942 + Atu3574 0.39 +0.4 627,964 - Atu3574 0.42 -0.3 627,969 - Atu3574 0.43 +1.3 628,032 - Atu3574 0.51 +0.9 628,039 + Atu3574 0.52 +0.5 628,070 - Atu3574 0.56 +1.5 628,145 - Atu3574 0.65 -1.5 628,259 + Atu3574 0.80 +0.7 628,259 + Atu3574 0.80 -0.5 628,260 - Atu3574 0.80 +0.1 628,267 - Atu3574 0.81 -0.5 628,311 - Atu3574 0.86 -0.4 628,404 - -0.6 628,405 - +1.3 628,413 + +0.4
Or see this region's nucleotide sequence