Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3570 and Atu3571 overlap by 1 nucleotides Atu3571 and Atu8113 overlap by 4 nucleotides
Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678
Atu3570
Atu3571: Atu3571 - hypothetical protein, at 624,678 to 625,391
Atu3571
Atu8113: Atu8113 - hypothetical protein, at 625,388 to 626,539
Atu8113
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 623.769 kb on + strand, within Atu3570 at 623.793 kb on + strand, within Atu3570 at 623.830 kb on + strand, within Atu3570 at 623.852 kb on + strand, within Atu3570 at 623.887 kb on + strand, within Atu3570 at 623.919 kb on - strand, within Atu3570 at 624.016 kb on - strand, within Atu3570 at 624.214 kb on + strand, within Atu3570 at 624.233 kb on + strand, within Atu3570 at 624.315 kb on + strand, within Atu3570 at 624.315 kb on + strand, within Atu3570 at 624.481 kb on - strand, within Atu3570 at 624.518 kb on - strand, within Atu3570 at 624.563 kb on + strand at 624.571 kb on - strand at 624.723 kb on - strand at 624.833 kb on - strand, within Atu3571 at 624.864 kb on - strand, within Atu3571 at 624.899 kb on - strand, within Atu3571 at 624.932 kb on + strand, within Atu3571 at 624.933 kb on + strand, within Atu3571 at 624.968 kb on - strand, within Atu3571 at 625.027 kb on - strand, within Atu3571 at 625.130 kb on + strand, within Atu3571 at 625.205 kb on - strand, within Atu3571 at 625.213 kb on + strand, within Atu3571 at 625.280 kb on + strand, within Atu3571 at 625.326 kb on + strand at 625.326 kb on - strand at 625.393 kb on - strand at 625.393 kb on - strand at 625.438 kb on - strand at 625.485 kb on + strand at 625.495 kb on - strand at 625.665 kb on - strand, within Atu8113 at 625.767 kb on + strand, within Atu8113 at 625.775 kb on - strand, within Atu8113 at 625.835 kb on - strand, within Atu8113 at 625.869 kb on + strand, within Atu8113 at 625.878 kb on - strand, within Atu8113 at 625.880 kb on + strand, within Atu8113 at 625.968 kb on + strand, within Atu8113 at 626.052 kb on + strand, within Atu8113 at 626.062 kb on + strand, within Atu8113 at 626.117 kb on + strand, within Atu8113 at 626.361 kb on - strand, within Atu8113 at 626.385 kb on + strand, within Atu8113
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 623,769 + Atu3570 0.24 -2.4 623,793 + Atu3570 0.26 +0.3 623,830 + Atu3570 0.29 +0.3 623,852 + Atu3570 0.31 -0.4 623,887 + Atu3570 0.34 -0.2 623,919 - Atu3570 0.37 +0.7 624,016 - Atu3570 0.45 +0.1 624,214 + Atu3570 0.61 -0.5 624,233 + Atu3570 0.63 +0.3 624,315 + Atu3570 0.70 +1.9 624,315 + Atu3570 0.70 -0.2 624,481 - Atu3570 0.83 -0.3 624,518 - Atu3570 0.87 +0.0 624,563 + +0.8 624,571 - -1.1 624,723 - -0.5 624,833 - Atu3571 0.22 -0.4 624,864 - Atu3571 0.26 +0.1 624,899 - Atu3571 0.31 +0.0 624,932 + Atu3571 0.36 -1.1 624,933 + Atu3571 0.36 -0.8 624,968 - Atu3571 0.41 -0.4 625,027 - Atu3571 0.49 +0.4 625,130 + Atu3571 0.63 -0.8 625,205 - Atu3571 0.74 -0.1 625,213 + Atu3571 0.75 -0.7 625,280 + Atu3571 0.84 -0.1 625,326 + -0.4 625,326 - +0.7 625,393 - -2.9 625,393 - +0.9 625,438 - -1.5 625,485 + -0.0 625,495 - -0.4 625,665 - Atu8113 0.24 -0.9 625,767 + Atu8113 0.33 -0.2 625,775 - Atu8113 0.34 +0.2 625,835 - Atu8113 0.39 -0.5 625,869 + Atu8113 0.42 -0.4 625,878 - Atu8113 0.43 +0.1 625,880 + Atu8113 0.43 +1.7 625,968 + Atu8113 0.50 +0.2 626,052 + Atu8113 0.58 -0.5 626,062 + Atu8113 0.59 -1.3 626,117 + Atu8113 0.63 -1.2 626,361 - Atu8113 0.84 -0.3 626,385 + Atu8113 0.87 +1.0
Or see this region's nucleotide sequence