Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3257 and Atu3258 are separated by 27 nucleotides Atu3258 and Atu3259 are separated by 174 nucleotides
Atu3257: Atu3257 - mannonate dehydratase, at 273,985 to 275,193
Atu3257
Atu3258: Atu3258 - hypothetical protein, at 275,221 to 275,643
Atu3258
Atu3259: Atu3259 - dehydrogenase, at 275,818 to 277,329
Atu3259
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.238 kb on + strand, within Atu3257 at 274.303 kb on + strand, within Atu3257 at 274.532 kb on + strand, within Atu3257 at 274.542 kb on + strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.753 kb on + strand, within Atu3257 at 274.756 kb on - strand, within Atu3257 at 274.764 kb on + strand, within Atu3257 at 274.884 kb on - strand, within Atu3257 at 274.990 kb on - strand, within Atu3257 at 274.990 kb on - strand, within Atu3257 at 275.037 kb on - strand, within Atu3257 at 275.086 kb on + strand at 275.111 kb on + strand at 275.182 kb on + strand at 275.252 kb on + strand at 275.316 kb on + strand, within Atu3258 at 275.319 kb on - strand, within Atu3258 at 275.487 kb on + strand, within Atu3258 at 275.487 kb on + strand, within Atu3258 at 275.577 kb on + strand, within Atu3258 at 275.694 kb on + strand at 275.694 kb on + strand at 275.694 kb on + strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.729 kb on - strand at 275.996 kb on + strand, within Atu3259 at 276.105 kb on + strand, within Atu3259 at 276.145 kb on - strand, within Atu3259 at 276.459 kb on + strand, within Atu3259 at 276.467 kb on - strand, within Atu3259 at 276.510 kb on + strand, within Atu3259 at 276.510 kb on + strand, within Atu3259 at 276.518 kb on - strand, within Atu3259 at 276.518 kb on - strand, within Atu3259 at 276.571 kb on + strand, within Atu3259 at 276.606 kb on + strand, within Atu3259
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 274,238 + Atu3257 0.21 +0.3 274,303 + Atu3257 0.26 -2.5 274,532 + Atu3257 0.45 -1.8 274,542 + Atu3257 0.46 +0.2 274,552 - Atu3257 0.47 +0.2 274,552 - Atu3257 0.47 +0.1 274,552 - Atu3257 0.47 -0.0 274,753 + Atu3257 0.64 -0.6 274,756 - Atu3257 0.64 -0.3 274,764 + Atu3257 0.64 +0.6 274,884 - Atu3257 0.74 +1.6 274,990 - Atu3257 0.83 -1.0 274,990 - Atu3257 0.83 -0.7 275,037 - Atu3257 0.87 +0.3 275,086 + -0.2 275,111 + +1.3 275,182 + +0.3 275,252 + +0.0 275,316 + Atu3258 0.22 -0.0 275,319 - Atu3258 0.23 +1.9 275,487 + Atu3258 0.63 -0.3 275,487 + Atu3258 0.63 +0.5 275,577 + Atu3258 0.84 +0.2 275,694 + +0.4 275,694 + -0.3 275,694 + -0.8 275,702 - -0.1 275,702 - -0.2 275,702 - +2.0 275,729 - +2.3 275,996 + Atu3259 0.12 -0.1 276,105 + Atu3259 0.19 +0.3 276,145 - Atu3259 0.22 -0.1 276,459 + Atu3259 0.42 +0.6 276,467 - Atu3259 0.43 +0.4 276,510 + Atu3259 0.46 -0.5 276,510 + Atu3259 0.46 +1.0 276,518 - Atu3259 0.46 +0.1 276,518 - Atu3259 0.46 -0.2 276,571 + Atu3259 0.50 +0.2 276,606 + Atu3259 0.52 -0.3
Or see this region's nucleotide sequence