Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3232 and Atu8185 are separated by 104 nucleotides Atu8185 and Atu3234 are separated by 111 nucleotides Atu3234 and Atu3235 are separated by 21 nucleotides
Atu3232: Atu3232 - hydroxypyruvate reductase, at 248,369 to 249,649
Atu3232
Atu8185: Atu8185 - hypothetical protein, at 249,754 to 250,017
Atu8185
Atu3234: Atu3234 - NAD binding oxidoreductase, at 250,129 to 251,316
Atu3234
Atu3235: Atu3235 - hypothetical protein, at 251,338 to 252,390
Atu3235
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 249.164 kb on + strand, within Atu3232 at 249.289 kb on + strand, within Atu3232 at 249.310 kb on + strand, within Atu3232 at 249.398 kb on - strand, within Atu3232 at 249.457 kb on - strand, within Atu3232 at 249.552 kb on - strand at 249.693 kb on + strand at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.781 kb on - strand, within Atu8185 at 249.813 kb on - strand, within Atu8185 at 250.083 kb on - strand at 250.201 kb on - strand at 250.229 kb on + strand at 250.229 kb on + strand at 250.230 kb on + strand at 250.283 kb on + strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.291 kb on - strand, within Atu3234 at 250.520 kb on - strand, within Atu3234 at 250.522 kb on + strand, within Atu3234 at 250.612 kb on + strand, within Atu3234 at 250.620 kb on - strand, within Atu3234 at 250.710 kb on + strand, within Atu3234 at 250.832 kb on + strand, within Atu3234 at 250.832 kb on - strand, within Atu3234 at 250.874 kb on + strand, within Atu3234 at 251.025 kb on + strand, within Atu3234 at 251.112 kb on + strand, within Atu3234 at 251.113 kb on - strand, within Atu3234 at 251.170 kb on - strand, within Atu3234 at 251.170 kb on - strand, within Atu3234 at 251.427 kb on - strand at 251.458 kb on + strand, within Atu3235 at 251.592 kb on + strand, within Atu3235 at 251.602 kb on + strand, within Atu3235 at 251.610 kb on - strand, within Atu3235 at 251.654 kb on + strand, within Atu3235 at 251.817 kb on - strand, within Atu3235 at 251.901 kb on + strand, within Atu3235 at 251.930 kb on - strand, within Atu3235 at 251.935 kb on - strand, within Atu3235 at 251.953 kb on - strand, within Atu3235 at 252.026 kb on + strand, within Atu3235 at 252.036 kb on + strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.067 kb on - strand, within Atu3235 at 252.086 kb on - strand, within Atu3235 at 252.148 kb on - strand, within Atu3235 at 252.194 kb on - strand, within Atu3235 at 252.262 kb on + strand, within Atu3235
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 249,164 + Atu3232 0.62 +0.3 249,289 + Atu3232 0.72 -0.1 249,310 + Atu3232 0.73 +0.5 249,398 - Atu3232 0.80 +0.4 249,457 - Atu3232 0.85 +0.4 249,552 - -0.3 249,693 + -0.7 249,781 - Atu8185 0.10 -0.7 249,781 - Atu8185 0.10 -0.3 249,781 - Atu8185 0.10 -0.4 249,813 - Atu8185 0.22 +0.2 250,083 - +0.1 250,201 - +0.2 250,229 + +0.3 250,229 + -0.2 250,230 + +0.6 250,283 + Atu3234 0.13 +0.1 250,291 - Atu3234 0.14 -0.6 250,291 - Atu3234 0.14 +0.3 250,520 - Atu3234 0.33 -0.5 250,522 + Atu3234 0.33 +0.1 250,612 + Atu3234 0.41 +0.2 250,620 - Atu3234 0.41 -0.8 250,710 + Atu3234 0.49 +1.8 250,832 + Atu3234 0.59 +0.7 250,832 - Atu3234 0.59 +0.1 250,874 + Atu3234 0.63 +2.0 251,025 + Atu3234 0.75 +0.2 251,112 + Atu3234 0.83 +0.3 251,113 - Atu3234 0.83 +0.3 251,170 - Atu3234 0.88 -0.9 251,170 - Atu3234 0.88 +0.4 251,427 - -0.4 251,458 + Atu3235 0.11 -0.9 251,592 + Atu3235 0.24 +0.9 251,602 + Atu3235 0.25 -0.5 251,610 - Atu3235 0.26 -1.0 251,654 + Atu3235 0.30 -0.2 251,817 - Atu3235 0.45 -2.0 251,901 + Atu3235 0.53 -0.8 251,930 - Atu3235 0.56 +0.4 251,935 - Atu3235 0.57 +0.3 251,953 - Atu3235 0.58 -0.4 252,026 + Atu3235 0.65 -0.3 252,036 + Atu3235 0.66 +0.9 252,057 - Atu3235 0.68 +0.4 252,057 - Atu3235 0.68 -0.7 252,067 - Atu3235 0.69 -1.4 252,086 - Atu3235 0.71 -0.3 252,148 - Atu3235 0.77 +1.3 252,194 - Atu3235 0.81 +0.1 252,262 + Atu3235 0.88 -0.4
Or see this region's nucleotide sequence