Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3171 and Atu3172 are separated by 4 nucleotides Atu3172 and Atu3173 are separated by 3 nucleotides Atu3173 and Atu3174 are separated by 210 nucleotides
Atu3171: Atu3171 - sugar ABC transporter ATPase, at 180,955 to 182,031
Atu3171
Atu3172: Atu3172 - sugar ABC transporter permease, at 182,036 to 182,866
Atu3172
Atu3173: Atu3173 - sugar ABC transporter permease, at 182,870 to 183,754
Atu3173
Atu3174: Atu3174 - sugar ABC transporter substrate-binding protein, at 183,965 to 185,224
Atu3174
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 181.972 kb on + strand at 181.989 kb on + strand at 182.033 kb on + strand at 182.033 kb on + strand at 182.073 kb on + strand at 182.133 kb on + strand, within Atu3172 at 182.360 kb on + strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.420 kb on + strand, within Atu3172 at 182.428 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.563 kb on - strand, within Atu3172 at 182.586 kb on + strand, within Atu3172 at 182.623 kb on + strand, within Atu3172 at 182.722 kb on + strand, within Atu3172 at 182.742 kb on + strand, within Atu3172 at 182.790 kb on + strand at 182.862 kb on + strand at 182.868 kb on + strand at 182.868 kb on + strand at 182.911 kb on + strand at 182.919 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand at 183.206 kb on + strand, within Atu3173 at 183.207 kb on + strand, within Atu3173 at 183.345 kb on - strand, within Atu3173 at 183.345 kb on - strand, within Atu3173 at 183.377 kb on - strand, within Atu3173 at 183.379 kb on + strand, within Atu3173 at 183.417 kb on + strand, within Atu3173 at 183.425 kb on - strand, within Atu3173 at 183.443 kb on + strand, within Atu3173 at 183.528 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.648 kb on + strand, within Atu3173 at 183.656 kb on - strand, within Atu3173 at 183.656 kb on - strand, within Atu3173 at 183.722 kb on - strand at 183.722 kb on - strand at 183.726 kb on + strand at 183.733 kb on - strand at 183.802 kb on + strand at 183.817 kb on - strand at 183.870 kb on - strand at 184.118 kb on - strand, within Atu3174 at 184.137 kb on + strand, within Atu3174 at 184.145 kb on - strand, within Atu3174 at 184.164 kb on - strand, within Atu3174 at 184.175 kb on - strand, within Atu3174 at 184.175 kb on - strand, within Atu3174 at 184.233 kb on + strand, within Atu3174 at 184.275 kb on - strand, within Atu3174 at 184.293 kb on - strand, within Atu3174 at 184.556 kb on + strand, within Atu3174 at 184.564 kb on - strand, within Atu3174 at 184.604 kb on - strand, within Atu3174 at 184.618 kb on + strand, within Atu3174 at 184.626 kb on - strand, within Atu3174 at 184.648 kb on + strand, within Atu3174 at 184.658 kb on + strand, within Atu3174 at 184.692 kb on - strand, within Atu3174 at 184.718 kb on - strand, within Atu3174
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 181,972 + +0.1 181,989 + -0.1 182,033 + -0.9 182,033 + +0.1 182,073 + +0.5 182,133 + Atu3172 0.12 +1.3 182,360 + Atu3172 0.39 +0.4 182,367 - Atu3172 0.40 -0.2 182,367 - Atu3172 0.40 +0.4 182,420 + Atu3172 0.46 -0.2 182,428 - Atu3172 0.47 +0.3 182,438 - Atu3172 0.48 -0.1 182,438 - Atu3172 0.48 -0.1 182,563 - Atu3172 0.63 -0.4 182,586 + Atu3172 0.66 +3.3 182,623 + Atu3172 0.71 -0.1 182,722 + Atu3172 0.83 +0.1 182,742 + Atu3172 0.85 +1.4 182,790 + -0.2 182,862 + -0.5 182,868 + -0.5 182,868 + -0.8 182,911 + +0.0 182,919 - +0.3 182,924 - +0.2 182,924 - -0.4 182,924 - +0.8 183,206 + Atu3173 0.38 -0.5 183,207 + Atu3173 0.38 -0.6 183,345 - Atu3173 0.54 -0.7 183,345 - Atu3173 0.54 -0.7 183,377 - Atu3173 0.57 -1.4 183,379 + Atu3173 0.58 +0.7 183,417 + Atu3173 0.62 -0.3 183,425 - Atu3173 0.63 -0.2 183,443 + Atu3173 0.65 +0.1 183,528 + Atu3173 0.74 +0.2 183,648 + Atu3173 0.88 -0.8 183,648 + Atu3173 0.88 +0.6 183,648 + Atu3173 0.88 -0.0 183,648 + Atu3173 0.88 -0.2 183,656 - Atu3173 0.89 -0.6 183,656 - Atu3173 0.89 -1.1 183,722 - +0.4 183,722 - -0.9 183,726 + -0.6 183,733 - +0.2 183,802 + -0.4 183,817 - +0.6 183,870 - +0.1 184,118 - Atu3174 0.12 -0.1 184,137 + Atu3174 0.14 +0.5 184,145 - Atu3174 0.14 +5.6 184,164 - Atu3174 0.16 -0.1 184,175 - Atu3174 0.17 +0.0 184,175 - Atu3174 0.17 -0.1 184,233 + Atu3174 0.21 -0.6 184,275 - Atu3174 0.25 +0.2 184,293 - Atu3174 0.26 +0.0 184,556 + Atu3174 0.47 -0.3 184,564 - Atu3174 0.48 -0.1 184,604 - Atu3174 0.51 -0.1 184,618 + Atu3174 0.52 -0.2 184,626 - Atu3174 0.52 +0.2 184,648 + Atu3174 0.54 -2.8 184,658 + Atu3174 0.55 -1.3 184,692 - Atu3174 0.58 -0.2 184,718 - Atu3174 0.60 +0.3
Or see this region's nucleotide sequence