Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3158 and Atu3159 are separated by 101 nucleotides Atu3159 and Atu3160 are separated by 53 nucleotides Atu3160 and Atu3161 are separated by 17 nucleotides
Atu3158: Atu3158 - ABC transporter substrate binding protein, at 167,043 to 168,038
Atu3158
Atu3159: Atu3159 - 3-hydroxyisobutyrate dehydrogenase, at 168,140 to 169,024
Atu3159
Atu3160: Atu3160 - hypothetical protein, at 169,078 to 169,380
Atu3160
Atu3161: Atu3161 - hypothetical protein, at 169,398 to 170,867
Atu3161
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.153 kb on + strand, within Atu3158 at 167.161 kb on - strand, within Atu3158 at 167.263 kb on + strand, within Atu3158 at 167.276 kb on - strand, within Atu3158 at 167.278 kb on + strand, within Atu3158 at 167.367 kb on + strand, within Atu3158 at 167.384 kb on + strand, within Atu3158 at 167.410 kb on + strand, within Atu3158 at 167.432 kb on + strand, within Atu3158 at 167.480 kb on + strand, within Atu3158 at 167.537 kb on + strand, within Atu3158 at 167.545 kb on - strand, within Atu3158 at 167.680 kb on + strand, within Atu3158 at 168.041 kb on + strand at 168.095 kb on - strand at 168.104 kb on - strand at 168.215 kb on + strand at 168.229 kb on + strand, within Atu3159 at 168.482 kb on - strand, within Atu3159 at 168.569 kb on - strand, within Atu3159 at 168.586 kb on - strand, within Atu3159 at 168.610 kb on - strand, within Atu3159 at 168.619 kb on + strand, within Atu3159 at 168.624 kb on + strand, within Atu3159 at 168.640 kb on - strand, within Atu3159 at 168.645 kb on - strand, within Atu3159 at 168.689 kb on + strand, within Atu3159 at 168.798 kb on + strand, within Atu3159 at 168.820 kb on - strand, within Atu3159 at 168.838 kb on - strand, within Atu3159 at 168.853 kb on + strand, within Atu3159 at 169.136 kb on - strand, within Atu3160 at 169.166 kb on + strand, within Atu3160 at 169.214 kb on - strand, within Atu3160 at 169.370 kb on + strand at 169.450 kb on + strand at 169.518 kb on - strand at 169.541 kb on + strand at 169.541 kb on + strand at 169.607 kb on + strand, within Atu3161 at 169.608 kb on - strand, within Atu3161 at 169.688 kb on + strand, within Atu3161 at 169.719 kb on - strand, within Atu3161 at 169.719 kb on - strand, within Atu3161 at 169.752 kb on - strand, within Atu3161 at 169.833 kb on - strand, within Atu3161 at 169.842 kb on + strand, within Atu3161 at 169.895 kb on - strand, within Atu3161 at 169.940 kb on - strand, within Atu3161 at 169.995 kb on + strand, within Atu3161
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 167,153 + Atu3158 0.11 -0.2 167,161 - Atu3158 0.12 +0.3 167,263 + Atu3158 0.22 +0.3 167,276 - Atu3158 0.23 +1.6 167,278 + Atu3158 0.24 +1.0 167,367 + Atu3158 0.33 +0.4 167,384 + Atu3158 0.34 +0.2 167,410 + Atu3158 0.37 +3.2 167,432 + Atu3158 0.39 -0.3 167,480 + Atu3158 0.44 +0.4 167,537 + Atu3158 0.50 +0.5 167,545 - Atu3158 0.50 +1.9 167,680 + Atu3158 0.64 -0.6 168,041 + +0.7 168,095 - -0.1 168,104 - +0.2 168,215 + +0.3 168,229 + Atu3159 0.10 +0.0 168,482 - Atu3159 0.39 -0.1 168,569 - Atu3159 0.48 -0.2 168,586 - Atu3159 0.50 +0.4 168,610 - Atu3159 0.53 +0.0 168,619 + Atu3159 0.54 -0.1 168,624 + Atu3159 0.55 +1.6 168,640 - Atu3159 0.56 +0.2 168,645 - Atu3159 0.57 -1.3 168,689 + Atu3159 0.62 -0.7 168,798 + Atu3159 0.74 -0.1 168,820 - Atu3159 0.77 -0.6 168,838 - Atu3159 0.79 -0.3 168,853 + Atu3159 0.81 +2.4 169,136 - Atu3160 0.19 -0.7 169,166 + Atu3160 0.29 +0.2 169,214 - Atu3160 0.45 -1.2 169,370 + -0.2 169,450 + -0.4 169,518 - -0.1 169,541 + +0.3 169,541 + -0.3 169,607 + Atu3161 0.14 -0.8 169,608 - Atu3161 0.14 -0.2 169,688 + Atu3161 0.20 +1.6 169,719 - Atu3161 0.22 +1.5 169,719 - Atu3161 0.22 +0.1 169,752 - Atu3161 0.24 -0.6 169,833 - Atu3161 0.30 -2.4 169,842 + Atu3161 0.30 +0.5 169,895 - Atu3161 0.34 -0.6 169,940 - Atu3161 0.37 -0.5 169,995 + Atu3161 0.41 +0.0
Or see this region's nucleotide sequence