Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0750 and Atu0751 overlap by 4 nucleotides Atu0751 and Atu0752 are separated by 112 nucleotides Atu0752 and Atu0753 are separated by 180 nucleotides
Atu0750: Atu0750 - ABC transporter, membrane spanning protein, at 747,717 to 748,349
Atu0750
Atu0751: Atu0751 - ABC transporter, nucleotide binding/ATPase protein (cobalt), at 748,346 to 749,026
Atu0751
Atu0752: Atu0752 - hypothetical protein, at 749,139 to 750,335
Atu0752
Atu0753: Atu0753 - 3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II, at 750,516 to 751,616
Atu0753
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 748.142 kb on + strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.259 kb on + strand, within Atu0750 at 748.267 kb on - strand, within Atu0750 at 748.296 kb on - strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.368 kb on - strand at 748.374 kb on + strand at 748.436 kb on + strand, within Atu0751 at 748.505 kb on - strand, within Atu0751 at 748.627 kb on + strand, within Atu0751 at 748.835 kb on + strand, within Atu0751 at 748.864 kb on + strand, within Atu0751 at 748.913 kb on - strand, within Atu0751 at 748.935 kb on + strand, within Atu0751 at 748.954 kb on + strand, within Atu0751 at 749.035 kb on - strand at 749.052 kb on + strand at 749.060 kb on - strand at 749.230 kb on - strand at 749.246 kb on - strand at 749.284 kb on + strand, within Atu0752 at 749.284 kb on + strand, within Atu0752 at 749.475 kb on - strand, within Atu0752 at 749.580 kb on + strand, within Atu0752 at 749.616 kb on + strand, within Atu0752 at 749.618 kb on + strand, within Atu0752 at 749.626 kb on - strand, within Atu0752 at 749.699 kb on - strand, within Atu0752 at 749.719 kb on - strand, within Atu0752 at 749.773 kb on + strand, within Atu0752 at 749.853 kb on + strand, within Atu0752 at 749.942 kb on - strand, within Atu0752 at 749.963 kb on + strand, within Atu0752 at 750.000 kb on + strand, within Atu0752 at 750.018 kb on + strand, within Atu0752 at 750.018 kb on - strand, within Atu0752 at 750.132 kb on - strand, within Atu0752 at 750.179 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.266 kb on + strand at 750.281 kb on + strand at 750.281 kb on + strand at 750.286 kb on + strand at 750.289 kb on - strand at 750.336 kb on + strand at 750.367 kb on - strand at 750.449 kb on + strand at 750.497 kb on + strand at 750.508 kb on + strand at 750.562 kb on - strand at 750.591 kb on - strand at 750.617 kb on + strand at 750.901 kb on + strand, within Atu0753 at 750.929 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.944 kb on - strand, within Atu0753 at 751.174 kb on + strand, within Atu0753 at 751.192 kb on - strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.297 kb on - strand, within Atu0753
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 748,142 + Atu0750 0.67 +1.8 748,142 + Atu0750 0.67 +0.2 748,199 + Atu0750 0.76 -0.8 748,199 + Atu0750 0.76 -0.6 748,207 - Atu0750 0.77 +1.6 748,207 - Atu0750 0.77 -0.2 748,207 - Atu0750 0.77 -0.5 748,207 - Atu0750 0.77 +0.3 748,209 + Atu0750 0.78 -0.3 748,209 + Atu0750 0.78 -0.2 748,217 - Atu0750 0.79 -0.4 748,217 - Atu0750 0.79 -0.3 748,259 + Atu0750 0.86 +1.3 748,267 - Atu0750 0.87 +0.5 748,296 - -0.4 748,360 + +0.2 748,360 + -0.2 748,360 + +3.0 748,368 - -0.4 748,374 + +0.8 748,436 + Atu0751 0.13 -0.8 748,505 - Atu0751 0.23 -1.1 748,627 + Atu0751 0.41 -0.4 748,835 + Atu0751 0.72 +0.0 748,864 + Atu0751 0.76 -0.8 748,913 - Atu0751 0.83 -1.4 748,935 + Atu0751 0.86 -2.3 748,954 + Atu0751 0.89 +0.2 749,035 - -0.1 749,052 + -0.1 749,060 - +0.1 749,230 - -0.8 749,246 - -0.3 749,284 + Atu0752 0.12 +0.0 749,284 + Atu0752 0.12 +1.1 749,475 - Atu0752 0.28 -0.3 749,580 + Atu0752 0.37 -1.7 749,616 + Atu0752 0.40 -0.6 749,618 + Atu0752 0.40 -0.2 749,626 - Atu0752 0.41 +0.8 749,699 - Atu0752 0.47 +0.9 749,719 - Atu0752 0.48 -0.6 749,773 + Atu0752 0.53 -0.2 749,853 + Atu0752 0.60 +0.9 749,942 - Atu0752 0.67 -0.8 749,963 + Atu0752 0.69 +1.3 750,000 + Atu0752 0.72 +0.2 750,018 + Atu0752 0.73 -0.8 750,018 - Atu0752 0.73 -0.4 750,132 - Atu0752 0.83 -0.3 750,179 + Atu0752 0.87 -0.3 750,214 + Atu0752 0.90 +0.5 750,214 + Atu0752 0.90 +0.3 750,266 + +0.2 750,281 + +0.5 750,281 + +0.5 750,286 + +2.3 750,289 - -1.2 750,336 + -0.2 750,367 - -0.6 750,449 + +0.4 750,497 + -0.4 750,508 + +0.0 750,562 - -1.2 750,591 - -0.0 750,617 + +1.7 750,901 + Atu0753 0.35 -0.5 750,929 + Atu0753 0.38 +0.7 750,931 + Atu0753 0.38 -0.7 750,931 + Atu0753 0.38 -1.5 750,939 - Atu0753 0.38 +0.1 750,939 - Atu0753 0.38 -0.6 750,944 - Atu0753 0.39 -0.3 751,174 + Atu0753 0.60 +2.2 751,192 - Atu0753 0.61 +0.1 751,289 + Atu0753 0.70 +2.3 751,289 + Atu0753 0.70 -1.0 751,289 + Atu0753 0.70 +0.3 751,297 - Atu0753 0.71 +0.6
Or see this region's nucleotide sequence