Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0673 and Atu0674 are separated by 6 nucleotides Atu0674 and Atu0675 overlap by 17 nucleotides Atu0675 and Atu0676 are separated by 156 nucleotides Atu0676 and Atu0677 are separated by 4 nucleotides Atu0677 and Atu0678 are separated by 16 nucleotides
Atu0673: Atu0673 - hypothetical protein, at 669,486 to 670,250
Atu0673
Atu0674: Atu0674 - hypothetical protein, at 670,257 to 670,526
Atu0674
Atu0675: Atu0675 - hypothetical protein, at 670,510 to 670,737
Atu0675
Atu0676: Atu0676 - histidyl-tRNA synthetase, at 670,894 to 672,417
Atu0676
Atu0677: Atu0677 - hypothetical protein, at 672,422 to 672,790
Atu0677
Atu0678: Atu0678 - histidyl-tRNA synthetase, at 672,807 to 673,934
Atu0678
Position (kb) 670
671
672
673 Strain fitness (log2 ratio) -1
0
1
2
3 at 670.003 kb on + strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.058 kb on - strand, within Atu0673 at 670.134 kb on + strand, within Atu0673 at 670.159 kb on + strand, within Atu0673 at 670.245 kb on - strand at 670.245 kb on - strand at 670.245 kb on - strand at 670.285 kb on + strand, within Atu0674 at 670.285 kb on + strand, within Atu0674 at 670.319 kb on + strand, within Atu0674 at 670.383 kb on + strand, within Atu0674 at 670.498 kb on + strand, within Atu0674 at 670.516 kb on + strand at 670.524 kb on - strand at 670.529 kb on - strand at 670.534 kb on - strand, within Atu0675 at 670.841 kb on + strand at 670.849 kb on + strand at 672.381 kb on + strand at 672.518 kb on - strand, within Atu0677 at 672.531 kb on - strand, within Atu0677 at 672.698 kb on - strand, within Atu0677 at 672.893 kb on + strand at 672.894 kb on - strand at 672.987 kb on - strand, within Atu0678 at 673.348 kb on + strand, within Atu0678 at 673.375 kb on - strand, within Atu0678 at 673.417 kb on + strand, within Atu0678
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 670,003 + Atu0673 0.68 +1.4 670,038 - Atu0673 0.72 -0.4 670,038 - Atu0673 0.72 -0.6 670,058 - Atu0673 0.75 +0.6 670,134 + Atu0673 0.85 +0.1 670,159 + Atu0673 0.88 -0.2 670,245 - -0.4 670,245 - -0.9 670,245 - +0.5 670,285 + Atu0674 0.10 -1.3 670,285 + Atu0674 0.10 -0.4 670,319 + Atu0674 0.23 +0.4 670,383 + Atu0674 0.47 +3.0 670,498 + Atu0674 0.89 -0.2 670,516 + -0.5 670,524 - -1.1 670,529 - +1.1 670,534 - Atu0675 0.11 -0.6 670,841 + -0.5 670,849 + +0.1 672,381 + -1.2 672,518 - Atu0677 0.26 -0.1 672,531 - Atu0677 0.30 +0.2 672,698 - Atu0677 0.75 -0.2 672,893 + +1.4 672,894 - -0.1 672,987 - Atu0678 0.16 -0.1 673,348 + Atu0678 0.48 -0.4 673,375 - Atu0678 0.50 +0.7 673,417 + Atu0678 0.54 +0.8
Or see this region's nucleotide sequence