Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0384 and Atu0385 overlap by 1 nucleotides Atu0385 and Atu8066 are separated by 36 nucleotides Atu8066 and Atu0386 are separated by 41 nucleotides Atu0386 and Atu0387 are separated by 37 nucleotides
Atu0384: Atu0384 - preprotein translocase 60 kD membrane subunit, at 376,063 to 377,862
Atu0384
Atu0385: Atu0385 - ribonuclease P protein component, at 377,862 to 378,245
Atu0385
Atu8066: Atu8066 - 50S ribosomal protein L34, at 378,282 to 378,419
Atu8066
Atu0386: Atu0386 - hypothetical protein, at 378,461 to 378,733
Atu0386
Atu0387: Atu0387 - methyl-accepting chemotaxis protein, at 378,771 to 380,819
Atu0387
Position (kb) 378
379 Strain fitness (log2 ratio) -1
0
1
2 at 378.702 kb on - strand, within Atu0386 at 378.814 kb on + strand at 378.824 kb on + strand at 378.832 kb on + strand at 378.840 kb on + strand at 378.842 kb on + strand at 378.913 kb on - strand at 378.921 kb on + strand at 378.957 kb on - strand at 378.966 kb on + strand at 379.033 kb on - strand, within Atu0387 at 379.054 kb on + strand, within Atu0387 at 379.077 kb on + strand, within Atu0387 at 379.111 kb on + strand, within Atu0387 at 379.119 kb on - strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.121 kb on + strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.129 kb on - strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.136 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.190 kb on + strand, within Atu0387 at 379.195 kb on + strand, within Atu0387 at 379.213 kb on - strand, within Atu0387 at 379.217 kb on + strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.225 kb on - strand, within Atu0387 at 379.280 kb on + strand, within Atu0387 at 379.289 kb on - strand, within Atu0387 at 379.345 kb on + strand, within Atu0387 at 379.379 kb on + strand, within Atu0387 at 379.399 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.469 kb on - strand, within Atu0387 at 379.479 kb on - strand, within Atu0387 at 379.549 kb on + strand, within Atu0387 at 379.562 kb on + strand, within Atu0387 at 379.570 kb on - strand, within Atu0387 at 379.593 kb on + strand, within Atu0387 at 379.669 kb on - strand, within Atu0387 at 379.681 kb on - strand, within Atu0387 at 379.705 kb on + strand, within Atu0387 at 379.732 kb on - strand, within Atu0387
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 378,702 - Atu0386 0.88 -1.4 378,814 + -0.5 378,824 + -0.1 378,832 + +1.7 378,840 + -0.3 378,842 + +0.4 378,913 - -0.1 378,921 + -0.2 378,957 - +0.8 378,966 + +0.4 379,033 - Atu0387 0.13 -0.4 379,054 + Atu0387 0.14 +0.2 379,077 + Atu0387 0.15 -0.4 379,111 + Atu0387 0.17 -0.0 379,119 - Atu0387 0.17 +0.1 379,121 + Atu0387 0.17 -0.7 379,121 + Atu0387 0.17 +0.0 379,121 + Atu0387 0.17 +0.4 379,121 + Atu0387 0.17 +0.2 379,121 + Atu0387 0.17 +0.3 379,121 + Atu0387 0.17 +1.1 379,121 + Atu0387 0.17 +0.4 379,129 - Atu0387 0.17 -1.0 379,129 - Atu0387 0.17 +0.5 379,136 + Atu0387 0.18 +0.2 379,136 + Atu0387 0.18 -0.4 379,190 + Atu0387 0.20 -0.0 379,190 + Atu0387 0.20 +0.2 379,195 + Atu0387 0.21 +0.6 379,213 - Atu0387 0.22 -0.2 379,217 + Atu0387 0.22 -0.6 379,225 - Atu0387 0.22 +0.6 379,225 - Atu0387 0.22 +0.0 379,280 + Atu0387 0.25 -0.7 379,289 - Atu0387 0.25 -0.8 379,345 + Atu0387 0.28 +0.3 379,379 + Atu0387 0.30 +1.4 379,399 - Atu0387 0.31 +0.6 379,469 - Atu0387 0.34 +0.4 379,469 - Atu0387 0.34 +0.8 379,479 - Atu0387 0.35 -0.3 379,549 + Atu0387 0.38 -0.1 379,562 + Atu0387 0.39 +0.1 379,570 - Atu0387 0.39 +2.4 379,593 + Atu0387 0.40 +1.5 379,669 - Atu0387 0.44 -0.3 379,681 - Atu0387 0.44 -0.2 379,705 + Atu0387 0.46 +0.3 379,732 - Atu0387 0.47 +0.4
Or see this region's nucleotide sequence