Strain Fitness in Pseudomonas putida KT2440 around PP_4692

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4690 and PP_4691 overlap by 38 nucleotidesPP_4691 and PP_4692 overlap by 1 nucleotidesPP_4692 and PP_4693 are separated by 210 nucleotidesPP_4693 and PP_4694 are separated by 48 nucleotides PP_4690: PP_4690 - Rieske 2Fe-2S family protein, at 5,329,368 to 5,329,712 _4690 PP_4691: PP_4691 - sugar fermentation stimulation protein A, at 5,329,675 to 5,330,388 _4691 PP_4692: PP_4692 - putative aspartate/tyrosine/aromatic aminotransferase, at 5,330,388 to 5,331,560 _4692 PP_4693: PP_4693 - RNA polymerase-binding transcription factor DksA, at 5,331,771 to 5,332,217 _4693 PP_4694: PP_4694 - Glutamyl-Q tRNA(Asp) synthetase, at 5,332,266 to 5,333,168 _4694 Position (kb) 5330 5331 5332Strain fitness (log2 ratio) -2 -1 0 1 2at 5329.426 kb on + strand, within PP_4690at 5329.427 kb on - strand, within PP_4690at 5329.470 kb on + strand, within PP_4690at 5329.470 kb on + strand, within PP_4690at 5329.470 kb on + strand, within PP_4690at 5329.471 kb on - strand, within PP_4690at 5329.471 kb on - strand, within PP_4690at 5329.471 kb on - strand, within PP_4690at 5329.476 kb on + strand, within PP_4690at 5329.716 kb on + strandat 5329.743 kb on - strandat 5329.853 kb on + strand, within PP_4691at 5329.853 kb on + strand, within PP_4691at 5329.854 kb on - strand, within PP_4691at 5329.994 kb on + strand, within PP_4691at 5329.994 kb on + strand, within PP_4691at 5329.994 kb on + strand, within PP_4691at 5329.995 kb on - strand, within PP_4691at 5329.995 kb on - strand, within PP_4691at 5330.052 kb on - strand, within PP_4691at 5330.278 kb on - strand, within PP_4691at 5330.293 kb on - strand, within PP_4691at 5330.342 kb on + strandat 5330.342 kb on + strandat 5330.342 kb on + strandat 5330.420 kb on + strandat 5330.420 kb on + strandat 5330.462 kb on - strandat 5330.462 kb on - strandat 5330.593 kb on + strand, within PP_4692at 5330.599 kb on + strand, within PP_4692at 5330.599 kb on + strand, within PP_4692at 5330.600 kb on - strand, within PP_4692at 5330.770 kb on + strand, within PP_4692at 5330.770 kb on + strand, within PP_4692at 5330.770 kb on + strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.771 kb on - strand, within PP_4692at 5330.857 kb on + strand, within PP_4692at 5330.870 kb on + strand, within PP_4692at 5330.870 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.926 kb on + strand, within PP_4692at 5330.927 kb on - strand, within PP_4692at 5330.941 kb on + strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5330.942 kb on - strand, within PP_4692at 5331.079 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.109 kb on + strand, within PP_4692at 5331.110 kb on - strand, within PP_4692at 5331.272 kb on + strand, within PP_4692at 5331.272 kb on + strand, within PP_4692at 5331.273 kb on - strand, within PP_4692at 5331.273 kb on - strand, within PP_4692at 5331.367 kb on + strand, within PP_4692at 5331.368 kb on - strand, within PP_4692at 5331.368 kb on - strand, within PP_4692at 5331.547 kb on + strandat 5331.547 kb on + strandat 5331.548 kb on - strandat 5331.595 kb on + strandat 5331.595 kb on + strandat 5331.596 kb on - strandat 5331.639 kb on + strandat 5331.673 kb on + strandat 5331.674 kb on - strandat 5331.674 kb on - strandat 5331.674 kb on - strandat 5331.766 kb on + strandat 5331.766 kb on + strandat 5331.767 kb on - strandat 5331.767 kb on - strandat 5331.767 kb on - strandat 5331.781 kb on + strandat 5331.810 kb on + strandat 5331.811 kb on - strandat 5331.825 kb on + strand, within PP_4693at 5331.825 kb on + strand, within PP_4693at 5331.825 kb on + strand, within PP_4693at 5331.826 kb on - strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.849 kb on + strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.850 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5331.942 kb on - strand, within PP_4693at 5332.090 kb on - strand, within PP_4693at 5332.149 kb on - strand, within PP_4693at 5332.176 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.263 kb on + strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.264 kb on - strandat 5332.265 kb on + strandat 5332.265 kb on + strandat 5332.266 kb on - strandat 5332.296 kb on + strandat 5332.296 kb on + strandat 5332.297 kb on - strandat 5332.508 kb on - strand, within PP_4694at 5332.508 kb on - strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.533 kb on + strand, within PP_4694at 5332.534 kb on - strand, within PP_4694at 5332.534 kb on - strand, within PP_4694at 5332.546 kb on + strand, within PP_4694at 5332.547 kb on - strand, within PP_4694

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
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5,329,426 + PP_4690 0.17 -1.1
5,329,427 - PP_4690 0.17 -0.8
5,329,470 + PP_4690 0.30 +2.7
5,329,470 + PP_4690 0.30 +1.0
5,329,470 + PP_4690 0.30 +0.9
5,329,471 - PP_4690 0.30 +1.3
5,329,471 - PP_4690 0.30 +0.7
5,329,471 - PP_4690 0.30 -0.1
5,329,476 + PP_4690 0.31 -0.6
5,329,716 + -0.9
5,329,743 - +0.1
5,329,853 + PP_4691 0.25 -0.8
5,329,853 + PP_4691 0.25 +0.2
5,329,854 - PP_4691 0.25 +0.2
5,329,994 + PP_4691 0.45 -0.4
5,329,994 + PP_4691 0.45 +0.4
5,329,994 + PP_4691 0.45 +1.2
5,329,995 - PP_4691 0.45 -0.3
5,329,995 - PP_4691 0.45 -0.2
5,330,052 - PP_4691 0.53 -0.1
5,330,278 - PP_4691 0.84 -0.1
5,330,293 - PP_4691 0.87 +0.1
5,330,342 + +0.6
5,330,342 + -0.1
5,330,342 + +1.0
5,330,420 + +1.2
5,330,420 + +0.4
5,330,462 - +0.6
5,330,462 - -0.2
5,330,593 + PP_4692 0.17 -1.2
5,330,599 + PP_4692 0.18 -1.3
5,330,599 + PP_4692 0.18 -0.6
5,330,600 - PP_4692 0.18 -1.9
5,330,770 + PP_4692 0.33 -2.0
5,330,770 + PP_4692 0.33 -0.4
5,330,770 + PP_4692 0.33 +0.4
5,330,771 - PP_4692 0.33 -0.3
5,330,771 - PP_4692 0.33 -0.6
5,330,771 - PP_4692 0.33 -1.3
5,330,771 - PP_4692 0.33 -0.0
5,330,857 + PP_4692 0.40 -0.2
5,330,870 + PP_4692 0.41 -0.3
5,330,870 + PP_4692 0.41 +0.1
5,330,926 + PP_4692 0.46 +0.3
5,330,926 + PP_4692 0.46 -1.1
5,330,926 + PP_4692 0.46 -0.4
5,330,926 + PP_4692 0.46 -1.3
5,330,927 - PP_4692 0.46 -1.2
5,330,941 + PP_4692 0.47 +0.4
5,330,942 - PP_4692 0.47 -0.6
5,330,942 - PP_4692 0.47 -0.1
5,330,942 - PP_4692 0.47 +0.4
5,331,079 + PP_4692 0.59 -0.5
5,331,109 + PP_4692 0.61 -0.7
5,331,109 + PP_4692 0.61 +0.8
5,331,109 + PP_4692 0.61 -0.4
5,331,109 + PP_4692 0.61 -1.1
5,331,110 - PP_4692 0.62 +2.7
5,331,272 + PP_4692 0.75 -0.1
5,331,272 + PP_4692 0.75 -0.1
5,331,273 - PP_4692 0.75 -0.2
5,331,273 - PP_4692 0.75 +0.6
5,331,367 + PP_4692 0.83 -0.0
5,331,368 - PP_4692 0.84 -0.3
5,331,368 - PP_4692 0.84 +2.7
5,331,547 + +2.1
5,331,547 + +1.0
5,331,548 - +0.4
5,331,595 + +0.1
5,331,595 + +0.7
5,331,596 - +1.1
5,331,639 + -1.2
5,331,673 + +1.7
5,331,674 - +2.7
5,331,674 - +2.7
5,331,674 - +2.7
5,331,766 + +1.7
5,331,766 + +2.7
5,331,767 - +2.7
5,331,767 - +2.7
5,331,767 - +2.7
5,331,781 + +2.7
5,331,810 + +2.7
5,331,811 - +2.7
5,331,825 + PP_4693 0.12 +2.7
5,331,825 + PP_4693 0.12 +2.7
5,331,825 + PP_4693 0.12 +2.7
5,331,826 - PP_4693 0.12 +2.7
5,331,849 + PP_4693 0.17 +0.7
5,331,849 + PP_4693 0.17 +2.7
5,331,849 + PP_4693 0.17 +2.7
5,331,849 + PP_4693 0.17 +2.7
5,331,849 + PP_4693 0.17 +1.7
5,331,849 + PP_4693 0.17 +2.7
5,331,850 - PP_4693 0.18 +0.6
5,331,850 - PP_4693 0.18 +2.7
5,331,850 - PP_4693 0.18 +2.7
5,331,850 - PP_4693 0.18 +2.7
5,331,850 - PP_4693 0.18 -0.1
5,331,850 - PP_4693 0.18 +2.7
5,331,850 - PP_4693 0.18 +2.7
5,331,850 - PP_4693 0.18 +2.7
5,331,942 - PP_4693 0.38 +2.7
5,331,942 - PP_4693 0.38 +2.7
5,331,942 - PP_4693 0.38 +2.7
5,332,090 - PP_4693 0.71 +2.7
5,332,149 - PP_4693 0.85 +2.7
5,332,176 + +2.7
5,332,263 + -0.5
5,332,263 + -0.6
5,332,263 + -0.1
5,332,263 + +0.9
5,332,263 + +0.4
5,332,263 + -0.1
5,332,264 - +0.4
5,332,264 - -1.1
5,332,264 - +0.3
5,332,264 - +0.5
5,332,264 - +0.7
5,332,265 + +0.3
5,332,265 + -0.8
5,332,266 - +1.1
5,332,296 + +0.9
5,332,296 + -1.3
5,332,297 - -0.8
5,332,508 - PP_4694 0.27 +0.7
5,332,508 - PP_4694 0.27 +1.7
5,332,533 + PP_4694 0.30 +1.1
5,332,533 + PP_4694 0.30 +0.4
5,332,533 + PP_4694 0.30 -0.9
5,332,533 + PP_4694 0.30 -0.1
5,332,534 - PP_4694 0.30 -0.7
5,332,534 - PP_4694 0.30 -0.4
5,332,546 + PP_4694 0.31 -0.4
5,332,547 - PP_4694 0.31 -0.9

Or see this region's nucleotide sequence