Strain Fitness in Pseudomonas putida KT2440 around PP_4637

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
5,259,826	-		PP_4636	0.31	-0.9
5,259,826	-		PP_4636	0.31	-0.3
5,259,921	+		PP_4636	0.39	-0.5
5,259,921	+		PP_4636	0.39	+0.2
5,259,921	+		PP_4636	0.39	+0.1
5,259,922	-		PP_4636	0.39	+0.5
5,259,922	-		PP_4636	0.39	-0.0
5,259,961	-		PP_4636	0.43	+0.5
5,259,962	-		PP_4636	0.43	-1.1
5,260,682	-				+0.7
5,260,731	-				+0.4
5,260,992	+		PP_4637	0.26	+0.7
5,260,993	-		PP_4637	0.26	+1.2
5,260,993	-		PP_4637	0.26	-0.8
5,260,993	-		PP_4637	0.26	+0.5
5,261,030	-		PP_4637	0.31	-2.9
5,261,119	+		PP_4637	0.42	+0.9
5,261,165	-		PP_4637	0.47	+0.2
5,261,176	+		PP_4637	0.48	+0.7
5,261,176	+		PP_4637	0.48	-0.2
5,261,278	+		PP_4637	0.61	+0.9
5,261,278	+		PP_4637	0.61	+1.6
5,261,278	+		PP_4637	0.61	-0.8
5,261,279	-		PP_4637	0.61	+1.3
5,261,279	-		PP_4637	0.61	+0.1
5,261,279	-		PP_4637	0.61	-0.3
5,261,279	-		PP_4637	0.61	-1.9
5,261,279	-		PP_4637	0.61	+0.2
5,261,350	+		PP_4637	0.70	-0.5
5,261,350	+		PP_4637	0.70	+0.2
5,261,351	-		PP_4637	0.70	+0.3
5,261,351	-		PP_4637	0.70	-1.0
5,261,351	-		PP_4637	0.70	+1.7
5,261,462	+		PP_4637	0.83	+1.2
5,261,462	+		PP_4637	0.83	+1.0
5,261,463	-		PP_4637	0.83	+1.1
5,261,585	+				-0.9
5,261,585	+				+1.0
5,261,586	-				-0.8
5,261,586	-				-0.2
5,261,586	-				-0.1
5,261,586	-				-0.1
5,261,827	+				+0.6
5,261,828	-				-0.1
5,261,875	-				+1.3
5,261,875	-				+0.3
5,262,138	+		PP_4638	0.21	-0.6
5,262,139	-		PP_4638	0.21	+0.1
5,262,305	+		PP_4638	0.32	+0.6
5,262,305	+		PP_4638	0.32	-1.2
5,262,305	+		PP_4638	0.32	-1.1
5,262,394	-		PP_4638	0.38	+0.1
5,262,394	-		PP_4638	0.38	-0.5
5,262,592	+		PP_4638	0.51	-0.6
5,262,598	+		PP_4638	0.52	-1.0
5,262,599	-		PP_4638	0.52	-1.0