Strain Fitness in Pseudomonas putida KT2440 around PP_4487

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
5,096,443	+		PP_4486	0.59	-0.5
5,096,444	-		PP_4486	0.59	-0.0
5,096,444	-		PP_4486	0.59	+0.3
5,096,444	-		PP_4486	0.59	+1.8
5,096,444	-		PP_4486	0.59	-0.8
5,096,444	-		PP_4486	0.59	+0.9
5,096,446	+		PP_4486	0.59	-1.7
5,096,570	+		PP_4486	0.75	+0.3
5,096,570	+		PP_4486	0.75	+0.5
5,096,570	+		PP_4486	0.75	+0.6
5,096,570	+		PP_4486	0.75	-0.4
5,096,614	+		PP_4486	0.81	-2.0
5,096,614	+		PP_4486	0.81	+2.8
5,096,665	+		PP_4486	0.87	+0.1
5,096,666	-		PP_4486	0.87	-0.4
5,096,770	+				-0.7
5,096,770	+				-0.3
5,096,770	+				-0.9
5,096,771	-				+0.3
5,096,771	-				+0.3
5,096,792	+				-0.2
5,096,792	+				-1.4
5,096,793	-				+0.5
5,096,793	-				+0.1
5,096,793	-				-1.4
5,096,793	-				-2.5
5,096,804	-				+0.5
5,096,804	-				+0.3
5,096,804	-				-0.3
5,096,829	+				-1.0
5,096,866	+				-1.9
5,096,867	-				-0.6
5,096,892	-				+2.8
5,096,913	-				+0.1
5,096,932	+				-0.5
5,096,932	+				+0.2
5,096,932	+				-0.1
5,096,932	+				+1.8
5,096,932	+				+2.2
5,096,933	-				+0.1
5,096,933	-				+0.3
5,096,933	-				+0.2
5,096,933	-				-0.5
5,096,933	-				-0.4
5,096,933	-				+0.9
5,096,933	-				+0.8
5,096,936	+				-0.5
5,096,936	+				-0.3
5,096,937	-				+0.5
5,096,938	+				+1.5
5,096,938	+				+0.3
5,097,012	+				+0.5
5,097,012	+				-1.8
5,097,013	-				+0.4
5,097,013	-				-0.6
5,097,013	-				-0.9
5,097,013	-				-0.6
5,097,013	-				+0.4
5,097,014	+				-1.0
5,097,014	+				-0.9
5,097,015	-				-0.3
5,097,055	+				+2.8
5,097,056	-				+0.7
5,097,056	-				-0.9
5,097,170	-				-0.0
5,097,239	+				+0.0
5,097,285	+				-1.0
5,097,285	+				+1.2
5,097,285	+				-0.1
5,097,302	+				+0.7
5,097,349	+				+1.1
5,097,350	-				+0.1
5,097,578	+		PP_4487	0.13	+0.7
5,097,578	+		PP_4487	0.13	-0.6
5,097,578	+		PP_4487	0.13	-0.8
5,097,578	+		PP_4487	0.13	-0.5
5,097,578	+		PP_4487	0.13	-0.7
5,097,578	+		PP_4487	0.13	+0.2
5,097,578	+		PP_4487	0.13	+0.2
5,097,578	+		PP_4487	0.13	-0.2
5,097,579	-		PP_4487	0.13	+1.2
5,097,579	-		PP_4487	0.13	-0.9
5,097,579	-		PP_4487	0.13	-1.7
5,097,579	-		PP_4487	0.13	-0.6
5,097,579	-		PP_4487	0.13	+1.3
5,097,579	-		PP_4487	0.13	+0.2
5,097,579	-		PP_4487	0.13	+0.8
5,097,584	+		PP_4487	0.14	+0.6
5,097,584	+		PP_4487	0.14	+0.5
5,097,584	+		PP_4487	0.14	-1.5
5,097,584	+		PP_4487	0.14	-0.4
5,097,584	+		PP_4487	0.14	-1.5
5,097,584	+		PP_4487	0.14	-1.4
5,097,584	+		PP_4487	0.14	+0.3
5,097,585	-		PP_4487	0.14	-0.8
5,097,585	-		PP_4487	0.14	-0.2
5,097,585	-		PP_4487	0.14	+0.4
5,097,585	-		PP_4487	0.14	+0.7
5,097,585	-		PP_4487	0.14	-0.4
5,097,585	-		PP_4487	0.14	+0.9
5,097,585	-		PP_4487	0.14	+0.2
5,097,585	-		PP_4487	0.14	+0.8
5,097,737	+		PP_4487	0.21	+0.5
5,097,776	+		PP_4487	0.23	+0.8
5,097,776	+		PP_4487	0.23	-0.7
5,097,777	-		PP_4487	0.23	-2.4
5,097,777	-		PP_4487	0.23	-0.7
5,097,777	-		PP_4487	0.23	-1.4
5,097,777	-		PP_4487	0.23	+1.2
5,097,800	+		PP_4487	0.24	+0.1
5,097,800	+		PP_4487	0.24	-0.9
5,097,801	-		PP_4487	0.24	-0.8
5,097,801	-		PP_4487	0.24	-0.4
5,097,801	-		PP_4487	0.24	-1.7
5,097,801	-		PP_4487	0.24	-1.3
5,097,801	-		PP_4487	0.24	-0.7
5,097,801	-		PP_4487	0.24	-1.1
5,097,868	+		PP_4487	0.27	+0.2
5,098,067	+		PP_4487	0.37	+0.4
5,098,067	+		PP_4487	0.37	-0.2
5,098,067	+		PP_4487	0.37	+1.0
5,098,067	+		PP_4487	0.37	+0.1
5,098,067	+		PP_4487	0.37	+0.4
5,098,068	-		PP_4487	0.37	-0.7
5,098,068	-		PP_4487	0.37	-0.4
5,098,068	-		PP_4487	0.37	-0.0
5,098,199	+		PP_4487	0.43	-0.5
5,098,310	+		PP_4487	0.48	+0.4
5,098,317	+		PP_4487	0.49	-1.9
5,098,317	+		PP_4487	0.49	+1.2
5,098,317	+		PP_4487	0.49	-0.6
5,098,318	-		PP_4487	0.49	+1.8
5,098,318	-		PP_4487	0.49	+1.1
5,098,319	+		PP_4487	0.49	+0.2
5,098,319	+		PP_4487	0.49	-0.2
5,098,319	+		PP_4487	0.49	+0.4
5,098,319	+		PP_4487	0.49	-0.2
5,098,320	-		PP_4487	0.49	+0.4
5,098,320	-		PP_4487	0.49	+0.3
5,098,320	-		PP_4487	0.49	-1.0
5,098,320	-		PP_4487	0.49	+0.2
5,098,320	-		PP_4487	0.49	+0.1
5,098,320	-		PP_4487	0.49	+0.2
5,098,320	-		PP_4487	0.49	+1.3
5,098,320	-		PP_4487	0.49	-0.5
5,098,361	+		PP_4487	0.51	+1.1
5,098,361	+		PP_4487	0.51	+0.8
5,098,361	+		PP_4487	0.51	+0.7
5,098,362	-		PP_4487	0.51	+0.2
5,098,362	-		PP_4487	0.51	+0.1
5,098,362	-		PP_4487	0.51	+0.2
5,098,362	-		PP_4487	0.51	-0.4
5,098,362	-		PP_4487	0.51	-0.4
5,098,412	+		PP_4487	0.53	-2.0
5,098,473	+		PP_4487	0.56	-1.0
5,098,473	+		PP_4487	0.56	-0.4
5,098,473	+		PP_4487	0.56	-0.3
5,098,474	-		PP_4487	0.56	+0.9
5,098,474	-		PP_4487	0.56	+0.3
5,098,474	-		PP_4487	0.56	-1.0
5,098,474	-		PP_4487	0.56	-2.9
5,098,474	-		PP_4487	0.56	+0.2
5,098,475	+		PP_4487	0.56	-0.2
5,098,475	+		PP_4487	0.56	+0.2
5,098,475	+		PP_4487	0.56	+0.3
5,098,475	+		PP_4487	0.56	-0.5
5,098,475	+		PP_4487	0.56	-0.1
5,098,475	+		PP_4487	0.56	+0.2
5,098,475	+		PP_4487	0.56	-0.2
5,098,475	+		PP_4487	0.56	-0.7
5,098,475	+		PP_4487	0.56	+0.8
5,098,475	+		PP_4487	0.56	+0.1
5,098,476	-		PP_4487	0.56	-0.3
5,098,476	-		PP_4487	0.56	+0.0
5,098,476	-		PP_4487	0.56	+1.8
5,098,553	+		PP_4487	0.60	+0.5
5,098,848	+		PP_4487	0.74	-0.1
5,098,849	-		PP_4487	0.74	+0.1
5,098,849	-				+1.8
5,098,850	+		PP_4487	0.74	+0.5
5,098,850	+		PP_4487	0.74	-0.7
5,098,850	+		PP_4487	0.74	-0.8
5,098,850	+		PP_4487	0.74	-0.4
5,098,851	-		PP_4487	0.74	+1.1
5,098,851	-		PP_4487	0.74	+0.2
5,098,851	-		PP_4487	0.74	+1.4
5,098,851	-		PP_4487	0.74	+0.1
5,098,851	-		PP_4487	0.74	+1.8
5,098,851	-		PP_4487	0.74	-0.6
5,098,851	-		PP_4487	0.74	+0.3
5,098,935	-		PP_4487	0.78	-0.4
5,098,935	-		PP_4487	0.78	+0.5
5,099,127	+		PP_4487	0.87	-0.0
5,099,180	+		PP_4487	0.90	+0.1
5,099,180	+		PP_4487	0.90	+0.9
5,099,181	-		PP_4487	0.90	+0.1
5,099,181	-		PP_4487	0.90	+0.1
5,099,181	-		PP_4487	0.90	-1.2
5,099,192	+				+1.2
5,099,192	+				-0.2
5,099,192	+				+1.2
5,099,192	+				-0.1
5,099,192	+				+0.2
5,099,193	-				+2.4
5,099,193	-				+1.0
5,099,193	-				+1.2
5,099,193	-				-0.6
5,099,215	-				-0.4
5,099,243	+				+1.2
5,099,279	+				+1.2
5,099,280	-				+2.2
5,099,280	-				-1.2
5,099,280	-				-0.6
5,099,282	+				+0.1
5,099,282	+				-0.9
5,099,283	-				-0.2
5,099,283	-				+0.7
5,099,283	-				-1.3
5,099,294	+				-0.2
5,099,309	-				-0.1
5,099,309	-				-0.2
5,099,315	-				+0.2
5,099,345	+				-0.8
5,099,348	+				+0.4
5,099,565	+				+0.2
5,099,602	-				+0.6
5,099,642	+				-0.3
5,099,643	-				-1.3
5,099,650	+				+1.4
5,099,650	+				-0.1
5,099,650	+				-1.4
5,099,651	-				+0.6
5,099,671	-				+0.3
5,099,676	+				-0.3
5,099,676	+				+0.7
5,099,676	+				-0.0
5,099,677	-				+0.2
5,099,683	-				+0.2
5,099,683	-				+0.3
5,099,754	-		PP_4488	0.37	+1.0
5,099,759	+		PP_4488	0.39	-0.2
5,099,759	+		PP_4488	0.39	+1.2
5,099,759	+		PP_4488	0.39	-2.0
5,099,843	+		PP_4488	0.72	+2.8
5,099,843	+		PP_4488	0.72	+0.1
5,099,843	+		PP_4488	0.72	+0.3
5,099,844	-		PP_4488	0.72	-0.7
5,099,844	-		PP_4488	0.72	+0.6
5,099,844	-		PP_4488	0.72	-0.5
5,099,844	-		PP_4488	0.72	-1.5
5,099,844	-		PP_4488	0.72	-0.2
5,099,915	+				+0.4
5,099,915	+				-0.4
5,099,916	-				+0.3
5,099,946	-				+0.1
5,099,973	+				-0.3
5,099,974	-				-0.5
5,099,974	-				+1.6
5,099,974	-				-1.0
5,099,974	-				+0.8
5,099,974	-				-0.3
5,099,998	+				-0.5
5,099,998	+				-0.6
5,099,999	-				+0.1
5,099,999	-				-0.3
5,099,999	-				-0.6
5,099,999	-				-0.9
5,100,001	+				+1.8
5,100,002	-				-1.1
5,100,002	-				+0.2
5,100,002	-				-1.2
5,100,002	-				-0.5
5,100,068	+				-0.4
5,100,267	-		PP_4489	0.13	+1.2
5,100,314	-		PP_4489	0.16	+0.9
5,100,352	+		PP_4489	0.18	-0.0
5,100,358	-		PP_4489	0.19	+0.1
5,100,371	+		PP_4489	0.19	+0.6
5,100,372	-		PP_4489	0.20	+0.0