Strain Fitness in Pseudomonas putida KT2440 around PP_4094

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
4,628,836	-				-0.3
4,628,958	-				+0.5
4,629,050	+				+0.2
4,629,125	-				+2.8
4,629,154	+				+0.1
4,629,154	+				-0.3
4,629,249	-				-1.9
4,629,290	+				-0.6
4,629,312	+				+0.2
4,629,313	-				-0.3
4,629,313	-				+1.3
4,629,338	+				+0.1
4,629,353	+				-0.1
4,629,353	+				-0.5
4,629,421	-				+1.8
4,629,421	-				-0.2
4,629,421	-				-0.1
4,629,422	+				+0.8
4,629,513	+				-0.4
4,629,520	+				-0.5
4,629,526	+				-1.5
4,629,737	-				+0.4
4,629,752	-				+0.9
4,629,761	-				-0.2
4,629,823	+		PP_4094	0.17	-0.4
4,629,840	-		PP_4094	0.20	-1.4
4,629,844	-		PP_4094	0.21	-0.9
4,630,219	-				+0.4
4,630,332	+				+0.1
4,630,458	+				-0.2
4,630,461	+				+0.1
4,630,566	-				+0.4
4,630,596	+				+1.5
4,630,596	+				+1.7
4,630,596	+				+0.6
4,630,596	+				-0.0
4,630,597	-				+0.2
4,630,647	-				+0.2
4,631,225	+				-0.6
4,631,226	-				-1.2