Strain Fitness in Pseudomonas putida KT2440 around PP_3797

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
4,326,102	+		PP_3796	0.43	+1.5
4,326,213	+		PP_3796	0.52	+0.7
4,326,214	-		PP_3796	0.52	+1.1
4,326,306	+		PP_3796	0.59	+0.2
4,326,307	-		PP_3796	0.59	+0.6
4,326,308	+		PP_3796	0.59	-0.0
4,326,308	+		PP_3796	0.59	+0.3
4,326,309	-		PP_3796	0.59	-0.4
4,326,321	+		PP_3796	0.60	-1.2
4,326,321	+		PP_3796	0.60	+0.6
4,326,321	+		PP_3796	0.60	-0.1
4,326,363	+		PP_3796	0.63	+0.6
4,326,414	+		PP_3796	0.67	+0.0
4,326,415	-		PP_3796	0.67	+0.9
4,326,415	-		PP_3796	0.67	-1.3
4,326,415	-		PP_3796	0.67	+0.1
4,326,415	-		PP_3796	0.67	+0.3
4,326,427	-		PP_3796	0.68	+0.1
4,326,573	-		PP_3796	0.79	-0.0
4,326,633	+		PP_3796	0.83	+0.1
4,326,633	+		PP_3796	0.83	+0.4
4,326,664	-		PP_3796	0.85	+0.9
4,326,670	+		PP_3796	0.86	+0.2
4,326,670	+		PP_3796	0.86	-0.5
4,326,702	+		PP_3796	0.88	-0.6
4,326,703	-		PP_3796	0.88	+0.4
4,326,973	+				+0.8
4,326,973	+				+1.1
4,327,239	-		PP_3797	0.17	+0.5
4,327,361	-		PP_3797	0.27	-0.7
4,327,364	+		PP_3797	0.28	-0.6
4,327,365	-		PP_3797	0.28	-0.8
4,327,365	-		PP_3797	0.28	-1.4
4,327,365	-		PP_3797	0.28	-0.5
4,327,365	-		PP_3797	0.28	-0.2
4,327,491	-		PP_3797	0.38	-1.3
4,327,543	+		PP_3797	0.43	+0.3
4,327,543	+		PP_3797	0.43	-1.8
4,327,543	+		PP_3797	0.43	+2.9
4,327,882	+		PP_3797	0.71	-1.3
4,327,882	+		PP_3797	0.71	-1.3
4,327,882	+		PP_3797	0.71	-2.0
4,327,916	-		PP_3797	0.74	-1.2
4,327,951	+		PP_3797	0.77	-1.7
4,327,952	-		PP_3797	0.77	+0.1
4,328,328	+		PP_3798	0.20	+0.1
4,328,328	+		PP_3798	0.20	-1.0
4,328,328	+		PP_3798	0.20	+0.5
4,328,329	-		PP_3798	0.20	-0.2
4,328,406	+		PP_3798	0.34	-0.6
4,328,406	+		PP_3798	0.34	-0.7
4,328,467	-		PP_3798	0.46	+0.2
4,328,679	+		PP_3798	0.85	-1.0
4,328,680	-		PP_3798	0.86	-0.1
4,328,680	-		PP_3798	0.86	-1.8
4,328,766	+				-0.6
4,328,766	+				-0.4
4,328,766	+				-0.2
4,328,793	+		PP_3799	0.12	+0.3
4,328,793	+		PP_3799	0.12	-1.1
4,329,005	+		PP_3799	0.79	-2.0
4,329,005	+		PP_3799	0.79	-1.0
4,329,005	+		PP_3799	0.79	-0.8
4,329,006	-		PP_3799	0.79	+1.3
4,329,006	-		PP_3799	0.79	-1.3
4,329,006	-		PP_3799	0.79	+0.9
4,329,050	+				+0.5
4,329,051	-				-2.2
4,329,121	+				-1.2
4,329,121	+				-2.7
4,329,121	+				-1.1
4,329,121	+				-1.1
4,329,153	-		PP_3800	0.15	-1.0
4,329,153	-		PP_3800	0.15	-1.4
4,329,153	-		PP_3800	0.15	-1.5