Strain Fitness in Pseudomonas putida KT2440 around PP_2725

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
3,109,964	-		PP_2723	0.75	+0.4
3,109,996	+		PP_2723	0.78	-0.5
3,109,997	-		PP_2723	0.79	-0.7
3,110,081	-		PP_2723	0.88	+0.8
3,110,166	-				-1.2
3,110,166	-				+0.3
3,110,313	+				-0.1
3,110,487	-		PP_2724	0.21	+2.9
3,110,555	+		PP_2724	0.34	+0.5
3,110,556	-		PP_2724	0.34	-0.2
3,110,556	-		PP_2724	0.34	+0.3
3,110,556	-		PP_2724	0.34	-0.3
3,110,690	-		PP_2724	0.60	-1.4
3,110,753	+		PP_2724	0.72	-0.3
3,110,753	+		PP_2724	0.72	-0.2
3,111,063	+		PP_2725	0.20	-1.7
3,111,102	-		PP_2725	0.27	-2.3
3,111,102	-		PP_2725	0.27	-0.8
3,111,355	+		PP_2725	0.73	+0.5
3,111,516	-				-2.2
3,111,526	+				-0.1
3,111,526	+				+0.1
3,111,574	-				+0.1
3,111,629	+				-0.5
3,111,629	+				+0.5
3,111,629	+				-0.3
3,111,630	-				-0.0
3,111,630	-				-0.4
3,111,790	+		PP_2726	0.29	-0.7
3,111,797	-		PP_2726	0.30	-0.4
3,111,871	-		PP_2726	0.41	+0.6
3,111,922	-		PP_2726	0.48	+0.8
3,111,928	+		PP_2726	0.49	+0.9
3,111,929	-		PP_2726	0.49	-0.1
3,112,065	+		PP_2726	0.69	+1.4
3,112,232	+				+0.1
3,112,248	+				-2.0
3,112,248	+				-0.6
3,112,249	-				+0.8
3,112,312	+				+0.5