Strain Fitness in Pseudomonas putida KT2440 around PP_0759

Experiment: 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5457 and PP_0758 are separated by 15 nucleotidesPP_0758 and PP_0759 are separated by 158 nucleotidesPP_0759 and PP_0760 are separated by 45 nucleotidesPP_0760 and PP_0761 are separated by 268 nucleotides PP_5457: PP_5457 - conserved protein of unknown function, at 873,367 to 873,627 _5457 PP_0758: PP_0758 - conserved protein of unknown function, at 873,643 to 874,263 _0758 PP_0759: PP_0759 - conserved exported protein of unknown function, at 874,422 to 875,261 _0759 PP_0760: PP_0760 - conserved membrane protein of unknown function, at 875,307 to 875,891 _0760 PP_0761: PP_0761 - Ribosomal RNA small subunit methyltransferase C, at 876,160 to 877,158 _0761 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1 2 3at 873.446 kb on + strand, within PP_5457at 873.446 kb on + strand, within PP_5457at 873.447 kb on - strand, within PP_5457at 873.447 kb on - strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.563 kb on - strand, within PP_5457at 873.563 kb on - strand, within PP_5457at 873.612 kb on + strandat 873.625 kb on + strandat 873.625 kb on + strandat 873.625 kb on + strandat 873.656 kb on - strandat 873.656 kb on - strandat 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.732 kb on - strand, within PP_0758at 873.934 kb on + strand, within PP_0758at 873.935 kb on - strand, within PP_0758at 874.001 kb on - strand, within PP_0758at 874.001 kb on - strand, within PP_0758at 874.043 kb on + strand, within PP_0758at 874.304 kb on + strandat 874.304 kb on + strandat 874.304 kb on + strandat 874.305 kb on - strandat 874.326 kb on + strandat 874.326 kb on + strandat 874.327 kb on - strandat 874.385 kb on - strandat 874.410 kb on - strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.512 kb on - strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.606 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.902 kb on - strand, within PP_0759at 874.926 kb on + strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.172 kb on - strand, within PP_0759at 875.238 kb on + strandat 875.238 kb on + strandat 875.239 kb on - strandat 875.239 kb on - strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.260 kb on - strandat 875.309 kb on - strandat 875.341 kb on + strandat 875.341 kb on + strandat 875.463 kb on - strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.861 kb on + strandat 875.923 kb on + strandat 875.924 kb on - strandat 875.924 kb on - strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.968 kb on + strandat 875.968 kb on + strandat 875.969 kb on - strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.071 kb on - strandat 876.100 kb on + strandat 876.101 kb on - strandat 876.101 kb on - strandat 876.129 kb on + strandat 876.179 kb on + strandat 876.179 kb on + strandat 876.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.
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873,446 + PP_5457 0.30 +0.3
873,446 + PP_5457 0.30 -0.2
873,447 - PP_5457 0.31 -0.2
873,447 - PP_5457 0.31 -0.5
873,562 + PP_5457 0.75 +1.0
873,562 + PP_5457 0.75 -0.9
873,562 + PP_5457 0.75 +1.3
873,562 + PP_5457 0.75 +0.3
873,563 - PP_5457 0.75 -0.4
873,563 - PP_5457 0.75 -0.4
873,612 + +0.2
873,625 + -0.8
873,625 + -1.1
873,625 + -0.1
873,656 - +2.2
873,656 - +1.2
873,729 + PP_0758 0.14 +1.2
873,729 + PP_0758 0.14 +1.3
873,729 + PP_0758 0.14 -0.6
873,729 + PP_0758 0.14 +0.8
873,730 - PP_0758 0.14 +2.8
873,730 - PP_0758 0.14 +1.4
873,730 - PP_0758 0.14 -0.8
873,731 + PP_0758 0.14 -0.0
873,731 + PP_0758 0.14 +1.3
873,731 + PP_0758 0.14 -0.4
873,732 - PP_0758 0.14 +0.1
873,934 + PP_0758 0.47 -0.4
873,935 - PP_0758 0.47 -0.0
874,001 - PP_0758 0.58 +0.4
874,001 - PP_0758 0.58 -0.4
874,043 + PP_0758 0.64 +2.8
874,304 + +0.1
874,304 + -1.1
874,304 + -0.3
874,305 - -0.2
874,326 + -0.5
874,326 + +0.4
874,327 - -0.9
874,385 - -2.2
874,410 - +0.4
874,448 + -1.1
874,448 + -0.6
874,448 + +0.1
874,449 - +0.5
874,449 - +0.6
874,449 - -0.9
874,449 - +1.8
874,449 - -0.8
874,511 + PP_0759 0.11 +0.4
874,511 + PP_0759 0.11 +0.5
874,511 + PP_0759 0.11 +0.0
874,512 - PP_0759 0.11 +1.4
874,551 + PP_0759 0.15 +1.0
874,551 + PP_0759 0.15 +0.8
874,551 + PP_0759 0.15 +1.1
874,552 - PP_0759 0.15 +2.8
874,552 - PP_0759 0.15 -0.8
874,552 - PP_0759 0.15 +0.4
874,552 - PP_0759 0.15 -0.9
874,552 - PP_0759 0.15 +1.8
874,552 - PP_0759 0.15 -0.5
874,552 - PP_0759 0.15 +0.0
874,593 + PP_0759 0.20 +0.8
874,593 + PP_0759 0.20 -0.8
874,594 - PP_0759 0.20 +1.2
874,594 - PP_0759 0.20 +0.4
874,606 - PP_0759 0.22 +0.6
874,813 - PP_0759 0.47 -0.9
874,813 - PP_0759 0.47 +1.8
874,902 - PP_0759 0.57 +0.2
874,926 + PP_0759 0.60 +0.8
874,927 - PP_0759 0.60 +1.8
874,927 - PP_0759 0.60 +0.8
874,927 - PP_0759 0.60 -0.6
875,014 - PP_0759 0.70 -0.7
875,014 - PP_0759 0.70 +0.2
875,014 - PP_0759 0.70 -0.6
875,014 - PP_0759 0.70 -1.0
875,014 - PP_0759 0.70 +1.4
875,172 - PP_0759 0.89 +1.0
875,238 + -0.5
875,238 + -0.3
875,239 - -0.4
875,239 - +0.1
875,259 + -0.0
875,259 + +0.9
875,259 + -0.3
875,259 + +2.8
875,260 - +0.3
875,309 - +1.0
875,341 + +0.9
875,341 + -0.0
875,463 - PP_0760 0.27 +0.2
875,483 + PP_0760 0.30 -0.5
875,483 + PP_0760 0.30 -0.3
875,484 - PP_0760 0.30 +0.2
875,484 - PP_0760 0.30 +1.1
875,861 + +0.3
875,923 + -0.9
875,924 - -0.7
875,924 - -0.2
875,932 + +0.6
875,932 + -0.6
875,932 + -0.9
875,932 + -0.3
875,932 + +0.2
875,933 - +0.5
875,933 - -1.0
875,933 - -0.5
875,933 - +0.6
875,933 - -1.0
875,933 - -1.0
875,933 - -0.2
875,968 + +0.6
875,968 + +0.2
875,969 - +0.5
876,058 + -0.0
876,058 + +0.6
876,058 + -0.3
876,058 + +0.6
876,058 + -0.1
876,058 + +0.0
876,058 + +2.1
876,058 + -0.0
876,059 - -0.5
876,059 - -2.5
876,059 - -0.5
876,059 - +0.8
876,059 - +0.3
876,071 - -1.3
876,100 + -0.7
876,101 - -1.2
876,101 - -0.5
876,129 + +0.5
876,179 + -0.5
876,179 + -1.4
876,180 - -0.8

Or see this region's nucleotide sequence