Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0410 and Atu8119 are separated by 114 nucleotides Atu8119 and Atu8120 are separated by 92 nucleotides Atu8120 and Atu0413 are separated by 317 nucleotides Atu0413 and Atu0414 are separated by 156 nucleotides
Atu0410: Atu0410 - transcriptional regulator, AraC family, at 408,723 to 409,586
Atu0410
Atu8119: Atu8119 - hypothetical protein, at 409,701 to 410,108
Atu8119
Atu8120: Atu8120 - hypothetical protein, at 410,201 to 410,443
Atu8120
Atu0413: Atu0413 - stress induced protein, at 410,761 to 410,919
Atu0413
Atu0414: Atu0414 - tRNA-Thr, at 411,076 to 411,151
Atu0414
Position (kb) 409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 408.709 kb on - strand at 408.709 kb on - strand at 408.777 kb on - strand at 408.874 kb on + strand, within Atu0410 at 408.896 kb on - strand, within Atu0410 at 408.928 kb on + strand, within Atu0410 at 408.993 kb on - strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.106 kb on - strand, within Atu0410 at 409.147 kb on - strand, within Atu0410 at 409.196 kb on - strand, within Atu0410 at 409.223 kb on + strand, within Atu0410 at 409.230 kb on - strand, within Atu0410 at 409.397 kb on - strand, within Atu0410 at 409.476 kb on - strand, within Atu0410 at 409.549 kb on + strand at 409.600 kb on - strand at 409.661 kb on + strand at 409.661 kb on + strand at 409.711 kb on + strand at 409.748 kb on + strand, within Atu8119 at 409.765 kb on + strand, within Atu8119 at 409.798 kb on - strand, within Atu8119 at 409.798 kb on - strand, within Atu8119 at 409.813 kb on - strand, within Atu8119 at 409.887 kb on + strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.937 kb on + strand, within Atu8119 at 409.957 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.975 kb on - strand, within Atu8119 at 410.048 kb on + strand, within Atu8119 at 410.056 kb on - strand, within Atu8119 at 410.056 kb on - strand, within Atu8119 at 410.070 kb on + strand at 410.078 kb on + strand at 410.078 kb on - strand at 410.110 kb on + strand at 410.202 kb on - strand at 410.238 kb on - strand, within Atu8120 at 410.283 kb on - strand, within Atu8120 at 410.336 kb on - strand, within Atu8120 at 410.450 kb on + strand at 410.452 kb on + strand at 410.460 kb on - strand at 410.460 kb on - strand at 410.460 kb on - strand at 410.504 kb on - strand at 410.511 kb on - strand at 410.529 kb on + strand at 410.529 kb on + strand at 410.689 kb on - strand at 410.767 kb on + strand at 410.780 kb on - strand, within Atu0413 at 410.794 kb on - strand, within Atu0413 at 410.855 kb on - strand, within Atu0413 at 411.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 408,709 - -0.7 408,709 - -2.9 408,777 - -1.0 408,874 + Atu0410 0.17 +0.1 408,896 - Atu0410 0.20 +0.5 408,928 + Atu0410 0.24 -0.0 408,993 - Atu0410 0.31 +0.3 409,062 + Atu0410 0.39 +0.1 409,062 + Atu0410 0.39 +0.3 409,062 + Atu0410 0.39 +0.3 409,106 - Atu0410 0.44 -1.6 409,147 - Atu0410 0.49 -0.2 409,196 - Atu0410 0.55 -0.4 409,223 + Atu0410 0.58 -1.0 409,230 - Atu0410 0.59 -0.1 409,397 - Atu0410 0.78 +0.1 409,476 - Atu0410 0.87 +0.4 409,549 + +0.3 409,600 - +0.7 409,661 + +0.8 409,661 + +0.1 409,711 + -0.3 409,748 + Atu8119 0.12 +0.7 409,765 + Atu8119 0.16 +0.2 409,798 - Atu8119 0.24 +0.2 409,798 - Atu8119 0.24 +3.0 409,813 - Atu8119 0.27 +0.0 409,887 + Atu8119 0.46 +0.0 409,895 - Atu8119 0.48 -0.8 409,895 - Atu8119 0.48 +0.8 409,895 - Atu8119 0.48 -0.7 409,895 - Atu8119 0.48 -0.7 409,937 + Atu8119 0.58 +4.0 409,957 + Atu8119 0.63 +1.0 409,967 + Atu8119 0.65 +0.7 409,967 + Atu8119 0.65 +0.3 409,967 + Atu8119 0.65 +0.4 409,975 - Atu8119 0.67 -0.1 410,048 + Atu8119 0.85 +0.1 410,056 - Atu8119 0.87 +0.9 410,056 - Atu8119 0.87 +0.3 410,070 + -0.9 410,078 + +2.0 410,078 - +1.3 410,110 + +0.7 410,202 - +1.9 410,238 - Atu8120 0.15 -0.1 410,283 - Atu8120 0.34 +1.8 410,336 - Atu8120 0.56 -1.8 410,450 + -1.1 410,452 + -0.5 410,460 - -0.0 410,460 - +1.8 410,460 - +0.4 410,504 - -0.1 410,511 - -0.4 410,529 + +0.3 410,529 + -0.3 410,689 - +1.0 410,767 + -0.5 410,780 - Atu0413 0.12 -1.4 410,794 - Atu0413 0.21 -1.4 410,855 - Atu0413 0.59 +0.7 411,004 + +1.7
Or see this region's nucleotide sequence