Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5491 and Atu5492 are separated by 76 nucleotides Atu5492 and Atu5493 are separated by 24 nucleotides Atu5493 and Atu5494 are separated by 531 nucleotides
Atu5491: Atu5491 - catalase C, at 480,336 to 482,477
Atu5491
Atu5492: Atu5492 - hypothetical protein, at 482,554 to 483,156
Atu5492
Atu5493: Atu5493 - hypothetical protein, at 483,181 to 483,498
Atu5493
Atu5494: Atu5494 - hypothetical protein, at 484,030 to 484,524
Atu5494
Position (kb) 483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 482.346 kb on + strand at 482.346 kb on + strand at 482.354 kb on - strand at 482.598 kb on + strand at 482.608 kb on + strand at 482.646 kb on + strand, within Atu5492 at 482.646 kb on + strand, within Atu5492 at 482.660 kb on + strand, within Atu5492 at 482.764 kb on + strand, within Atu5492 at 482.805 kb on + strand, within Atu5492 at 482.822 kb on + strand, within Atu5492 at 482.830 kb on - strand, within Atu5492 at 482.858 kb on + strand, within Atu5492 at 482.957 kb on + strand, within Atu5492 at 482.968 kb on + strand, within Atu5492 at 482.968 kb on + strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 483.084 kb on - strand, within Atu5492 at 483.105 kb on + strand at 483.202 kb on - strand at 483.249 kb on + strand, within Atu5493 at 483.257 kb on - strand, within Atu5493 at 483.271 kb on - strand, within Atu5493 at 483.284 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.406 kb on - strand, within Atu5493 at 483.683 kb on - strand at 483.729 kb on + strand at 483.745 kb on + strand at 483.759 kb on + strand at 483.761 kb on - strand at 483.856 kb on + strand at 483.858 kb on + strand at 483.858 kb on + strand at 483.888 kb on + strand at 483.895 kb on + strand at 483.920 kb on + strand at 483.981 kb on + strand at 483.981 kb on + strand at 483.989 kb on - strand at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.115 kb on - strand, within Atu5494 at 484.115 kb on - strand, within Atu5494 at 484.122 kb on - strand, within Atu5494 at 484.206 kb on + strand, within Atu5494 at 484.302 kb on - strand, within Atu5494 at 484.332 kb on + strand, within Atu5494 at 484.402 kb on - strand, within Atu5494
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 482,346 + -2.1 482,346 + -0.7 482,354 - -0.9 482,598 + -0.3 482,608 + -0.9 482,646 + Atu5492 0.15 -0.1 482,646 + Atu5492 0.15 +0.2 482,660 + Atu5492 0.18 -1.2 482,764 + Atu5492 0.35 -0.1 482,805 + Atu5492 0.42 +0.1 482,822 + Atu5492 0.44 -1.1 482,830 - Atu5492 0.46 -0.8 482,858 + Atu5492 0.50 -2.1 482,957 + Atu5492 0.67 +0.6 482,968 + Atu5492 0.69 +0.9 482,968 + Atu5492 0.69 +0.2 482,976 - Atu5492 0.70 +0.1 482,976 - Atu5492 0.70 +0.0 482,976 - Atu5492 0.70 -0.5 482,976 - Atu5492 0.70 -0.4 483,084 - Atu5492 0.88 +0.7 483,105 + -0.3 483,202 - -1.0 483,249 + Atu5493 0.21 +0.3 483,257 - Atu5493 0.24 +0.7 483,271 - Atu5493 0.28 -1.4 483,284 + Atu5493 0.32 -0.0 483,294 + Atu5493 0.36 -0.2 483,294 + Atu5493 0.36 +0.9 483,406 - Atu5493 0.71 +3.0 483,683 - -0.6 483,729 + +0.6 483,745 + +0.0 483,759 + -0.0 483,761 - +1.0 483,856 + -0.6 483,858 + -0.2 483,858 + +0.7 483,888 + -0.8 483,895 + -0.0 483,920 + -0.2 483,981 + -1.3 483,981 + +0.2 483,989 - -2.5 484,107 + Atu5494 0.16 -3.1 484,107 + Atu5494 0.16 -0.6 484,107 + Atu5494 0.16 +0.4 484,107 + Atu5494 0.16 +0.7 484,115 - Atu5494 0.17 +0.5 484,115 - Atu5494 0.17 -0.1 484,122 - Atu5494 0.19 -0.3 484,206 + Atu5494 0.36 +0.7 484,302 - Atu5494 0.55 -0.6 484,332 + Atu5494 0.61 +0.8 484,402 - Atu5494 0.75 +4.4
Or see this region's nucleotide sequence