Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3382 and Atu3383 overlap by 14 nucleotides Atu3383 and Atu3384 are separated by 14 nucleotides Atu3384 and Atu3385 are separated by 103 nucleotides
Atu3382: Atu3382 - HlyD family secretion protein, at 423,621 to 424,934
Atu3382
Atu3383: Atu3383 - rhizobicin secretion, at 424,921 to 426,768
Atu3383
Atu3384: Atu3384 - hypothetical protein, at 426,783 to 427,538
Atu3384
Atu3385: Atu3385 - heme receptor, at 427,642 to 430,413
Atu3385
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 423.932 kb on - strand, within Atu3382 at 423.984 kb on - strand, within Atu3382 at 424.102 kb on + strand, within Atu3382 at 424.127 kb on + strand, within Atu3382 at 424.148 kb on + strand, within Atu3382 at 424.165 kb on + strand, within Atu3382 at 424.261 kb on + strand, within Atu3382 at 424.293 kb on + strand, within Atu3382 at 424.471 kb on + strand, within Atu3382 at 424.543 kb on + strand, within Atu3382 at 424.588 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.664 kb on - strand, within Atu3382 at 424.770 kb on + strand, within Atu3382 at 424.919 kb on + strand at 424.970 kb on + strand at 425.034 kb on - strand at 425.090 kb on - strand at 425.091 kb on + strand at 425.114 kb on + strand, within Atu3383 at 425.233 kb on - strand, within Atu3383 at 425.233 kb on - strand, within Atu3383 at 425.283 kb on - strand, within Atu3383 at 425.299 kb on + strand, within Atu3383 at 425.331 kb on + strand, within Atu3383 at 425.514 kb on - strand, within Atu3383 at 425.658 kb on - strand, within Atu3383 at 425.663 kb on + strand, within Atu3383 at 425.837 kb on + strand, within Atu3383 at 425.837 kb on + strand, within Atu3383 at 425.850 kb on - strand, within Atu3383 at 426.076 kb on + strand, within Atu3383 at 426.078 kb on - strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.185 kb on + strand, within Atu3383 at 426.255 kb on + strand, within Atu3383 at 426.275 kb on + strand, within Atu3383 at 426.334 kb on - strand, within Atu3383 at 426.385 kb on + strand, within Atu3383 at 426.433 kb on - strand, within Atu3383 at 426.447 kb on + strand, within Atu3383 at 426.447 kb on + strand, within Atu3383 at 426.465 kb on - strand, within Atu3383 at 426.502 kb on + strand, within Atu3383 at 426.552 kb on + strand, within Atu3383 at 426.560 kb on - strand, within Atu3383 at 426.565 kb on - strand, within Atu3383 at 426.580 kb on - strand, within Atu3383 at 426.638 kb on + strand at 426.656 kb on + strand at 426.676 kb on - strand at 426.890 kb on + strand, within Atu3384 at 426.986 kb on - strand, within Atu3384 at 427.037 kb on + strand, within Atu3384 at 427.045 kb on - strand, within Atu3384 at 427.070 kb on + strand, within Atu3384 at 427.278 kb on + strand, within Atu3384 at 427.321 kb on + strand, within Atu3384 at 427.418 kb on + strand, within Atu3384 at 427.421 kb on - strand, within Atu3384 at 427.428 kb on + strand, within Atu3384 at 427.446 kb on - strand, within Atu3384 at 427.450 kb on + strand, within Atu3384 at 427.458 kb on - strand, within Atu3384 at 427.499 kb on + strand at 427.504 kb on + strand at 427.533 kb on + strand at 427.541 kb on + strand at 427.548 kb on - strand at 427.556 kb on + strand at 427.556 kb on + strand at 427.564 kb on - strand at 427.578 kb on - strand at 427.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 423,932 - Atu3382 0.24 -0.8 423,984 - Atu3382 0.28 -0.6 424,102 + Atu3382 0.37 +2.5 424,127 + Atu3382 0.39 -1.2 424,148 + Atu3382 0.40 +1.4 424,165 + Atu3382 0.41 +0.3 424,261 + Atu3382 0.49 -0.3 424,293 + Atu3382 0.51 +0.2 424,471 + Atu3382 0.65 -0.1 424,543 + Atu3382 0.70 +0.1 424,588 + Atu3382 0.74 -0.2 424,656 + Atu3382 0.79 -0.3 424,656 + Atu3382 0.79 +0.3 424,656 + Atu3382 0.79 -0.5 424,664 - Atu3382 0.79 -0.5 424,770 + Atu3382 0.87 -0.4 424,919 + -1.6 424,970 + +1.3 425,034 - +2.2 425,090 - +0.3 425,091 + -2.3 425,114 + Atu3383 0.10 +0.0 425,233 - Atu3383 0.17 -0.1 425,233 - Atu3383 0.17 +0.4 425,283 - Atu3383 0.20 -0.1 425,299 + Atu3383 0.20 +2.2 425,331 + Atu3383 0.22 +0.5 425,514 - Atu3383 0.32 -1.9 425,658 - Atu3383 0.40 +0.7 425,663 + Atu3383 0.40 +0.4 425,837 + Atu3383 0.50 -0.7 425,837 + Atu3383 0.50 +0.6 425,850 - Atu3383 0.50 +0.1 426,076 + Atu3383 0.62 -0.3 426,078 - Atu3383 0.63 -0.3 426,081 + Atu3383 0.63 -0.7 426,081 + Atu3383 0.63 -1.9 426,081 + Atu3383 0.63 -0.4 426,089 - Atu3383 0.63 -0.4 426,089 - Atu3383 0.63 -0.4 426,089 - Atu3383 0.63 +1.7 426,089 - Atu3383 0.63 +0.1 426,089 - Atu3383 0.63 +0.1 426,185 + Atu3383 0.68 -0.1 426,255 + Atu3383 0.72 +4.0 426,275 + Atu3383 0.73 -0.4 426,334 - Atu3383 0.76 -0.8 426,385 + Atu3383 0.79 -0.1 426,433 - Atu3383 0.82 +0.4 426,447 + Atu3383 0.83 +0.1 426,447 + Atu3383 0.83 -0.3 426,465 - Atu3383 0.84 +0.6 426,502 + Atu3383 0.86 +0.6 426,552 + Atu3383 0.88 -0.1 426,560 - Atu3383 0.89 +0.7 426,565 - Atu3383 0.89 +0.1 426,580 - Atu3383 0.90 +0.8 426,638 + -0.3 426,656 + -0.3 426,676 - -0.6 426,890 + Atu3384 0.14 +0.1 426,986 - Atu3384 0.27 +0.7 427,037 + Atu3384 0.34 +0.8 427,045 - Atu3384 0.35 +0.3 427,070 + Atu3384 0.38 +4.3 427,278 + Atu3384 0.65 +0.3 427,321 + Atu3384 0.71 -0.5 427,418 + Atu3384 0.84 +1.0 427,421 - Atu3384 0.84 +0.6 427,428 + Atu3384 0.85 -1.7 427,446 - Atu3384 0.88 -0.0 427,450 + Atu3384 0.88 +0.1 427,458 - Atu3384 0.89 -1.8 427,499 + -0.1 427,504 + +0.6 427,533 + -0.4 427,541 + +0.6 427,548 - +1.0 427,556 + +0.1 427,556 + +1.0 427,564 - -0.4 427,578 - -0.5 427,648 - +0.4
Or see this region's nucleotide sequence