Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3255 and Atu3256 are separated by 75 nucleotides Atu3256 and Atu3257 are separated by 16 nucleotides
Atu3255: Atu3255 - dicarboxylate ABC transporter permease, at 271,503 to 272,846
Atu3255
Atu3256: Atu3256 - zinc-binding dehydrogenase, at 272,922 to 273,968
Atu3256
Atu3257: Atu3257 - mannonate dehydratase, at 273,985 to 275,193
Atu3257
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.943 kb on + strand, within Atu3255 at 272.029 kb on - strand, within Atu3255 at 272.124 kb on + strand, within Atu3255 at 272.227 kb on - strand, within Atu3255 at 272.260 kb on + strand, within Atu3255 at 272.260 kb on + strand, within Atu3255 at 272.268 kb on - strand, within Atu3255 at 272.346 kb on - strand, within Atu3255 at 272.369 kb on - strand, within Atu3255 at 272.652 kb on - strand, within Atu3255 at 272.683 kb on + strand, within Atu3255 at 272.691 kb on - strand, within Atu3255 at 272.817 kb on - strand at 272.835 kb on - strand at 272.835 kb on - strand at 272.902 kb on + strand at 272.902 kb on + strand at 272.902 kb on + strand at 272.912 kb on + strand at 272.917 kb on + strand at 272.919 kb on + strand at 273.109 kb on + strand, within Atu3256 at 273.263 kb on + strand, within Atu3256 at 273.409 kb on + strand, within Atu3256 at 273.515 kb on - strand, within Atu3256 at 273.685 kb on - strand, within Atu3256 at 273.827 kb on - strand, within Atu3256 at 273.914 kb on + strand at 273.914 kb on + strand at 273.922 kb on - strand at 273.952 kb on + strand at 274.004 kb on + strand at 274.151 kb on - strand, within Atu3257 at 274.238 kb on + strand, within Atu3257 at 274.303 kb on + strand, within Atu3257 at 274.532 kb on + strand, within Atu3257 at 274.542 kb on + strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.753 kb on + strand, within Atu3257 at 274.756 kb on - strand, within Atu3257 at 274.764 kb on + strand, within Atu3257 at 274.884 kb on - strand, within Atu3257
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 271,943 + Atu3255 0.33 +0.3 272,029 - Atu3255 0.39 -0.7 272,124 + Atu3255 0.46 -1.2 272,227 - Atu3255 0.54 -0.3 272,260 + Atu3255 0.56 -0.0 272,260 + Atu3255 0.56 +1.1 272,268 - Atu3255 0.57 -0.3 272,346 - Atu3255 0.63 -0.4 272,369 - Atu3255 0.64 +1.2 272,652 - Atu3255 0.85 -0.3 272,683 + Atu3255 0.88 -0.9 272,691 - Atu3255 0.88 -0.4 272,817 - -2.2 272,835 - +1.3 272,835 - +0.4 272,902 + -1.4 272,902 + +0.1 272,902 + -2.2 272,912 + +0.3 272,917 + +0.1 272,919 + -0.9 273,109 + Atu3256 0.18 -0.2 273,263 + Atu3256 0.33 -0.1 273,409 + Atu3256 0.47 -0.1 273,515 - Atu3256 0.57 -0.1 273,685 - Atu3256 0.73 -2.1 273,827 - Atu3256 0.86 -0.1 273,914 + -0.4 273,914 + +1.0 273,922 - -0.3 273,952 + -0.0 274,004 + +0.1 274,151 - Atu3257 0.14 -1.9 274,238 + Atu3257 0.21 +1.0 274,303 + Atu3257 0.26 +2.8 274,532 + Atu3257 0.45 +0.7 274,542 + Atu3257 0.46 +0.1 274,552 - Atu3257 0.47 +0.7 274,552 - Atu3257 0.47 -0.2 274,552 - Atu3257 0.47 +0.2 274,753 + Atu3257 0.64 -0.1 274,756 - Atu3257 0.64 +1.0 274,764 + Atu3257 0.64 -1.6 274,884 - Atu3257 0.74 -0.9
Or see this region's nucleotide sequence