Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3234 and Atu3235 are separated by 21 nucleotides Atu3235 and Atu3236 are separated by 144 nucleotides
Atu3234: Atu3234 - NAD binding oxidoreductase, at 250,129 to 251,316
Atu3234
Atu3235: Atu3235 - hypothetical protein, at 251,338 to 252,390
Atu3235
Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608
Atu3236
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 250.520 kb on - strand, within Atu3234 at 250.522 kb on + strand, within Atu3234 at 250.612 kb on + strand, within Atu3234 at 250.620 kb on - strand, within Atu3234 at 250.710 kb on + strand, within Atu3234 at 250.832 kb on + strand, within Atu3234 at 250.832 kb on - strand, within Atu3234 at 250.874 kb on + strand, within Atu3234 at 251.025 kb on + strand, within Atu3234 at 251.112 kb on + strand, within Atu3234 at 251.113 kb on - strand, within Atu3234 at 251.170 kb on - strand, within Atu3234 at 251.170 kb on - strand, within Atu3234 at 251.427 kb on - strand at 251.458 kb on + strand, within Atu3235 at 251.592 kb on + strand, within Atu3235 at 251.602 kb on + strand, within Atu3235 at 251.610 kb on - strand, within Atu3235 at 251.654 kb on + strand, within Atu3235 at 251.817 kb on - strand, within Atu3235 at 251.901 kb on + strand, within Atu3235 at 251.930 kb on - strand, within Atu3235 at 251.935 kb on - strand, within Atu3235 at 251.953 kb on - strand, within Atu3235 at 252.026 kb on + strand, within Atu3235 at 252.036 kb on + strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.057 kb on - strand, within Atu3235 at 252.067 kb on - strand, within Atu3235 at 252.086 kb on - strand, within Atu3235 at 252.148 kb on - strand, within Atu3235 at 252.194 kb on - strand, within Atu3235 at 252.262 kb on + strand, within Atu3235 at 252.331 kb on - strand at 252.341 kb on - strand at 252.559 kb on + strand at 252.559 kb on + strand at 252.567 kb on - strand at 252.567 kb on - strand at 252.567 kb on - strand at 252.573 kb on - strand at 252.583 kb on - strand at 252.605 kb on + strand at 252.637 kb on - strand at 252.656 kb on - strand, within Atu3236 at 252.678 kb on - strand, within Atu3236 at 252.687 kb on - strand, within Atu3236 at 252.713 kb on + strand, within Atu3236 at 252.799 kb on - strand, within Atu3236 at 252.878 kb on + strand, within Atu3236 at 252.993 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.029 kb on + strand, within Atu3236 at 253.045 kb on + strand, within Atu3236 at 253.053 kb on - strand, within Atu3236 at 253.076 kb on + strand, within Atu3236 at 253.172 kb on - strand, within Atu3236 at 253.286 kb on + strand, within Atu3236 at 253.312 kb on - strand, within Atu3236 at 253.319 kb on - strand, within Atu3236 at 253.361 kb on - strand, within Atu3236
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 250,520 - Atu3234 0.33 +0.9 250,522 + Atu3234 0.33 -0.1 250,612 + Atu3234 0.41 -0.7 250,620 - Atu3234 0.41 +0.0 250,710 + Atu3234 0.49 +1.3 250,832 + Atu3234 0.59 -0.2 250,832 - Atu3234 0.59 -0.1 250,874 + Atu3234 0.63 +1.6 251,025 + Atu3234 0.75 -1.3 251,112 + Atu3234 0.83 +1.5 251,113 - Atu3234 0.83 +1.2 251,170 - Atu3234 0.88 +0.0 251,170 - Atu3234 0.88 -0.4 251,427 - +0.2 251,458 + Atu3235 0.11 -0.9 251,592 + Atu3235 0.24 -0.4 251,602 + Atu3235 0.25 -0.0 251,610 - Atu3235 0.26 +0.1 251,654 + Atu3235 0.30 -0.1 251,817 - Atu3235 0.45 +0.4 251,901 + Atu3235 0.53 +1.3 251,930 - Atu3235 0.56 +0.2 251,935 - Atu3235 0.57 -1.2 251,953 - Atu3235 0.58 +0.5 252,026 + Atu3235 0.65 -0.5 252,036 + Atu3235 0.66 -0.3 252,057 - Atu3235 0.68 -0.0 252,057 - Atu3235 0.68 +4.3 252,067 - Atu3235 0.69 +0.3 252,086 - Atu3235 0.71 -0.5 252,148 - Atu3235 0.77 +0.5 252,194 - Atu3235 0.81 +1.2 252,262 + Atu3235 0.88 -0.3 252,331 - +0.8 252,341 - +0.6 252,559 + +0.3 252,559 + -0.3 252,567 - +2.6 252,567 - +0.8 252,567 - +1.6 252,573 - +0.5 252,583 - +0.6 252,605 + +0.5 252,637 - -0.3 252,656 - Atu3236 0.11 +0.9 252,678 - Atu3236 0.13 -1.4 252,687 - Atu3236 0.14 -0.3 252,713 + Atu3236 0.17 +2.1 252,799 - Atu3236 0.25 +0.7 252,878 + Atu3236 0.32 -0.3 252,993 + Atu3236 0.43 -1.6 253,029 + Atu3236 0.46 +2.5 253,029 + Atu3236 0.46 -0.0 253,045 + Atu3236 0.47 -0.3 253,053 - Atu3236 0.48 -0.7 253,076 + Atu3236 0.50 -2.0 253,172 - Atu3236 0.59 -0.4 253,286 + Atu3236 0.70 +1.2 253,312 - Atu3236 0.72 +0.3 253,319 - Atu3236 0.73 -0.0 253,361 - Atu3236 0.77 +1.2
Or see this region's nucleotide sequence