Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3175 and Atu3176 overlap by 4 nucleotides Atu3176 and Atu3177 are separated by 216 nucleotides Atu3177 and Atu3178 are separated by 170 nucleotides
Atu3175: Atu3175 - hypothetical protein, at 185,263 to 186,435
Atu3175
Atu3176: Atu3176 - GntR family transcriptional regulator, at 186,432 to 187,148
Atu3176
Atu3177: Atu3177 - ribonuclease H, at 187,365 to 187,838
Atu3177
Atu3178: Atu3178 - ABC transporter substrate binding protein, at 188,009 to 189,022
Atu3178
Position (kb) 187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.394 kb on + strand at 186.407 kb on + strand at 186.523 kb on + strand, within Atu3176 at 186.523 kb on + strand, within Atu3176 at 186.525 kb on - strand, within Atu3176 at 186.531 kb on - strand, within Atu3176 at 186.584 kb on + strand, within Atu3176 at 186.584 kb on - strand, within Atu3176 at 186.592 kb on - strand, within Atu3176 at 186.623 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.761 kb on + strand, within Atu3176 at 186.769 kb on + strand, within Atu3176 at 186.803 kb on + strand, within Atu3176 at 186.831 kb on + strand, within Atu3176 at 186.837 kb on - strand, within Atu3176 at 186.994 kb on + strand, within Atu3176 at 187.052 kb on - strand, within Atu3176 at 187.058 kb on + strand, within Atu3176 at 187.089 kb on - strand at 187.143 kb on + strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.438 kb on + strand, within Atu3177 at 187.439 kb on - strand, within Atu3177 at 187.458 kb on + strand, within Atu3177 at 187.597 kb on + strand, within Atu3177 at 187.634 kb on - strand, within Atu3177 at 187.638 kb on - strand, within Atu3177 at 187.668 kb on - strand, within Atu3177 at 187.796 kb on + strand at 187.826 kb on - strand at 187.970 kb on - strand at 187.989 kb on - strand at 187.989 kb on - strand at 188.000 kb on - strand at 188.059 kb on + strand at 188.067 kb on - strand at 188.120 kb on + strand, within Atu3178 at 188.133 kb on - strand, within Atu3178 at 188.134 kb on - strand, within Atu3178 at 188.139 kb on - strand, within Atu3178 at 188.207 kb on - strand, within Atu3178 at 188.207 kb on - strand, within Atu3178 at 188.495 kb on + strand, within Atu3178 at 188.503 kb on - strand, within Atu3178 at 188.691 kb on + strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.699 kb on - strand, within Atu3178 at 188.777 kb on - strand, within Atu3178
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 186,394 + +0.9 186,407 + +3.4 186,523 + Atu3176 0.13 -0.4 186,523 + Atu3176 0.13 -1.2 186,525 - Atu3176 0.13 +0.2 186,531 - Atu3176 0.14 -0.5 186,584 + Atu3176 0.21 +0.6 186,584 - Atu3176 0.21 +0.8 186,592 - Atu3176 0.22 -1.6 186,623 - Atu3176 0.27 -1.3 186,700 - Atu3176 0.37 -3.6 186,700 - Atu3176 0.37 -0.7 186,761 + Atu3176 0.46 +0.3 186,769 + Atu3176 0.47 +0.2 186,803 + Atu3176 0.52 -0.9 186,831 + Atu3176 0.56 -0.4 186,837 - Atu3176 0.56 -1.9 186,994 + Atu3176 0.78 -0.0 187,052 - Atu3176 0.86 -1.0 187,058 + Atu3176 0.87 +0.4 187,089 - -0.1 187,143 + -0.5 187,151 - -0.5 187,151 - -0.1 187,151 - -0.1 187,438 + Atu3177 0.15 +2.0 187,439 - Atu3177 0.16 +0.3 187,458 + Atu3177 0.20 +1.6 187,597 + Atu3177 0.49 -0.2 187,634 - Atu3177 0.57 +0.4 187,638 - Atu3177 0.58 +1.0 187,668 - Atu3177 0.64 -0.9 187,796 + +0.2 187,826 - +1.3 187,970 - -0.6 187,989 - -0.9 187,989 - -0.2 188,000 - +0.1 188,059 + +1.4 188,067 - +0.4 188,120 + Atu3178 0.11 -0.1 188,133 - Atu3178 0.12 +0.5 188,134 - Atu3178 0.12 -1.3 188,139 - Atu3178 0.13 -0.3 188,207 - Atu3178 0.20 -0.0 188,207 - Atu3178 0.20 -0.1 188,495 + Atu3178 0.48 -0.1 188,503 - Atu3178 0.49 +1.2 188,691 + Atu3178 0.67 +0.1 188,699 - Atu3178 0.68 -0.3 188,699 - Atu3178 0.68 +0.8 188,699 - Atu3178 0.68 -0.2 188,777 - Atu3178 0.76 +1.0
Or see this region's nucleotide sequence