Strain Fitness in Agrobacterium fabrum C58 around Atu0865

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0863 and Atu0864 are separated by 103 nucleotidesAtu0864 and Atu0865 are separated by 72 nucleotidesAtu0865 and Atu0866 are separated by 344 nucleotidesAtu0866 and Atu0867 are separated by 24 nucleotides Atu0863: Atu0863 - hypothetical protein, at 860,643 to 861,074 Atu0863 Atu0864: Atu0864 - oxidoreductase, at 861,178 to 861,936 Atu0864 Atu0865: Atu0865 - transcriptional regulator, AraC family, at 862,009 to 862,815 Atu0865 Atu0866: Atu0866 - RhtB family transporter, at 863,160 to 863,771 Atu0866 Atu0867: Atu0867 - aldo/keto reductase, at 863,796 to 864,623 Atu0867 Position (kb) 862 863Strain fitness (log2 ratio) -2 -1 0 1 2at 861.029 kb on - strand, within Atu0863at 861.048 kb on + strandat 861.050 kb on - strandat 861.081 kb on - strandat 861.228 kb on + strandat 861.228 kb on + strandat 861.231 kb on - strandat 861.343 kb on - strand, within Atu0864at 861.350 kb on - strand, within Atu0864at 861.393 kb on + strand, within Atu0864at 861.399 kb on + strand, within Atu0864at 861.401 kb on - strand, within Atu0864at 861.419 kb on - strand, within Atu0864at 861.477 kb on + strand, within Atu0864at 861.479 kb on - strand, within Atu0864at 861.616 kb on + strand, within Atu0864at 861.616 kb on + strand, within Atu0864at 861.738 kb on - strand, within Atu0864at 861.743 kb on - strand, within Atu0864at 861.762 kb on - strand, within Atu0864at 861.762 kb on - strand, within Atu0864at 861.773 kb on + strand, within Atu0864at 861.790 kb on + strand, within Atu0864at 861.930 kb on + strandat 861.930 kb on + strandat 861.930 kb on + strandat 861.930 kb on + strandat 861.938 kb on - strandat 861.938 kb on - strandat 861.938 kb on - strandat 862.052 kb on + strandat 862.178 kb on + strand, within Atu0865at 862.181 kb on - strand, within Atu0865at 862.196 kb on + strand, within Atu0865at 862.371 kb on + strand, within Atu0865at 862.422 kb on - strand, within Atu0865at 862.560 kb on - strand, within Atu0865at 862.565 kb on - strand, within Atu0865at 862.623 kb on + strand, within Atu0865at 862.649 kb on + strand, within Atu0865at 862.649 kb on + strand, within Atu0865at 862.862 kb on + strandat 862.872 kb on + strandat 862.970 kb on + strandat 863.003 kb on - strandat 863.003 kb on - strandat 863.020 kb on + strandat 863.042 kb on + strandat 863.060 kb on + strandat 863.126 kb on - strandat 863.134 kb on - strandat 863.145 kb on + strandat 863.153 kb on - strandat 863.153 kb on - strandat 863.158 kb on - strandat 863.219 kb on + strandat 863.251 kb on + strand, within Atu0866at 863.251 kb on + strand, within Atu0866at 863.251 kb on + strand, within Atu0866at 863.251 kb on + strand, within Atu0866at 863.251 kb on + strand, within Atu0866at 863.251 kb on + strand, within Atu0866at 863.259 kb on - strand, within Atu0866at 863.259 kb on - strand, within Atu0866at 863.340 kb on + strand, within Atu0866at 863.347 kb on + strand, within Atu0866at 863.348 kb on - strand, within Atu0866at 863.348 kb on - strand, within Atu0866at 863.355 kb on - strand, within Atu0866at 863.355 kb on - strand, within Atu0866at 863.360 kb on - strand, within Atu0866at 863.369 kb on + strand, within Atu0866at 863.396 kb on + strand, within Atu0866at 863.404 kb on - strand, within Atu0866at 863.404 kb on - strand, within Atu0866at 863.404 kb on - strand, within Atu0866at 863.515 kb on - strand, within Atu0866at 863.616 kb on + strand, within Atu0866at 863.616 kb on + strand, within Atu0866at 863.616 kb on + strand, within Atu0866at 863.624 kb on - strand, within Atu0866at 863.703 kb on + strand, within Atu0866at 863.705 kb on + strand, within Atu0866

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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861,029 - Atu0863 0.89 +0.6
861,048 + -0.2
861,050 - +0.6
861,081 - +1.1
861,228 + -2.6
861,228 + -0.2
861,231 - +0.1
861,343 - Atu0864 0.22 -0.3
861,350 - Atu0864 0.23 -0.1
861,393 + Atu0864 0.28 -0.4
861,399 + Atu0864 0.29 +0.3
861,401 - Atu0864 0.29 +1.6
861,419 - Atu0864 0.32 -1.0
861,477 + Atu0864 0.39 -2.5
861,479 - Atu0864 0.40 +0.7
861,616 + Atu0864 0.58 -1.2
861,616 + Atu0864 0.58 +0.3
861,738 - Atu0864 0.74 -2.5
861,743 - Atu0864 0.74 +0.6
861,762 - Atu0864 0.77 -1.5
861,762 - Atu0864 0.77 +0.1
861,773 + Atu0864 0.78 -1.1
861,790 + Atu0864 0.81 +0.2
861,930 + -0.8
861,930 + +1.6
861,930 + +2.5
861,930 + -0.4
861,938 - -0.5
861,938 - +0.8
861,938 - +1.0
862,052 + -1.3
862,178 + Atu0865 0.21 -1.3
862,181 - Atu0865 0.21 +0.7
862,196 + Atu0865 0.23 -0.2
862,371 + Atu0865 0.45 -0.7
862,422 - Atu0865 0.51 -0.6
862,560 - Atu0865 0.68 -0.2
862,565 - Atu0865 0.69 -1.0
862,623 + Atu0865 0.76 -0.8
862,649 + Atu0865 0.79 +0.9
862,649 + Atu0865 0.79 -0.9
862,862 + -0.1
862,872 + -1.6
862,970 + +1.6
863,003 - -0.2
863,003 - -1.1
863,020 + -0.1
863,042 + -2.1
863,060 + +0.3
863,126 - -0.9
863,134 - -0.4
863,145 + +1.5
863,153 - -0.3
863,153 - +0.2
863,158 - +0.0
863,219 + -0.4
863,251 + Atu0866 0.15 +1.0
863,251 + Atu0866 0.15 -0.1
863,251 + Atu0866 0.15 -0.3
863,251 + Atu0866 0.15 +0.4
863,251 + Atu0866 0.15 +0.9
863,251 + Atu0866 0.15 +0.7
863,259 - Atu0866 0.16 -1.1
863,259 - Atu0866 0.16 +1.0
863,340 + Atu0866 0.29 -0.5
863,347 + Atu0866 0.31 -0.3
863,348 - Atu0866 0.31 -0.4
863,348 - Atu0866 0.31 +0.2
863,355 - Atu0866 0.32 -0.4
863,355 - Atu0866 0.32 -0.6
863,360 - Atu0866 0.33 +2.5
863,369 + Atu0866 0.34 +0.2
863,396 + Atu0866 0.39 -0.6
863,404 - Atu0866 0.40 +0.6
863,404 - Atu0866 0.40 -0.9
863,404 - Atu0866 0.40 +1.7
863,515 - Atu0866 0.58 +1.0
863,616 + Atu0866 0.75 +0.0
863,616 + Atu0866 0.75 +0.3
863,616 + Atu0866 0.75 -1.6
863,624 - Atu0866 0.76 +1.9
863,703 + Atu0866 0.89 -0.6
863,705 + Atu0866 0.89 +0.1

Or see this region's nucleotide sequence