Strain Fitness in Agrobacterium fabrum C58 around Atu0816

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0814 and Atu0815 are separated by 426 nucleotidesAtu0815 and Atu0816 are separated by 221 nucleotidesAtu0816 and Atu0817 overlap by 1 nucleotidesAtu0817 and Atu0818 are separated by 28 nucleotides Atu0814: Atu0814 - tRNA-Pro, at 813,141 to 813,217 Atu0814 Atu0815: Atu0815 - hypothetical protein, at 813,644 to 813,805 Atu0815 Atu0816: Atu0816 - sulfate adenylate transferase, subunit 1, at 814,027 to 815,511 Atu0816 Atu0817: Atu0817 - sulfate adenylate transferase, subunit 2, at 815,511 to 816,464 Atu0817 Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254 Atu0818 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 813.145 kb on + strandat 813.145 kb on + strandat 813.145 kb on + strandat 813.218 kb on + strandat 813.594 kb on + strandat 813.597 kb on - strandat 813.602 kb on - strandat 813.678 kb on + strand, within Atu0815at 813.702 kb on - strand, within Atu0815at 813.704 kb on + strand, within Atu0815at 813.712 kb on - strand, within Atu0815at 813.780 kb on + strand, within Atu0815at 813.840 kb on + strandat 813.885 kb on + strandat 813.893 kb on - strandat 813.893 kb on - strandat 814.104 kb on - strandat 814.112 kb on + strandat 814.157 kb on - strandat 814.163 kb on + strandat 814.168 kb on + strandat 814.193 kb on - strand, within Atu0816at 814.198 kb on - strand, within Atu0816at 814.210 kb on - strand, within Atu0816at 814.210 kb on - strand, within Atu0816at 814.251 kb on + strand, within Atu0816at 814.259 kb on - strand, within Atu0816at 814.273 kb on + strand, within Atu0816at 814.278 kb on + strand, within Atu0816at 814.330 kb on - strand, within Atu0816at 814.359 kb on - strand, within Atu0816at 814.382 kb on + strand, within Atu0816at 814.390 kb on - strand, within Atu0816at 814.479 kb on - strand, within Atu0816at 814.481 kb on + strand, within Atu0816at 814.518 kb on + strand, within Atu0816at 814.518 kb on + strand, within Atu0816at 814.526 kb on - strand, within Atu0816at 814.560 kb on - strand, within Atu0816at 814.602 kb on - strand, within Atu0816at 814.638 kb on + strand, within Atu0816at 814.732 kb on + strand, within Atu0816at 814.764 kb on - strand, within Atu0816at 814.766 kb on - strand, within Atu0816at 814.783 kb on - strand, within Atu0816at 814.788 kb on - strand, within Atu0816at 814.793 kb on - strand, within Atu0816at 814.955 kb on - strand, within Atu0816at 815.071 kb on - strand, within Atu0816at 815.075 kb on - strand, within Atu0816at 815.159 kb on - strand, within Atu0816at 815.219 kb on + strand, within Atu0816at 815.263 kb on - strand, within Atu0816at 815.291 kb on - strand, within Atu0816at 815.345 kb on - strand, within Atu0816at 815.354 kb on + strand, within Atu0816at 815.369 kb on - strandat 815.469 kb on - strandat 815.627 kb on + strand, within Atu0817at 815.768 kb on + strand, within Atu0817at 815.770 kb on + strand, within Atu0817at 815.770 kb on + strand, within Atu0817at 815.788 kb on + strand, within Atu0817at 815.788 kb on + strand, within Atu0817at 815.921 kb on + strand, within Atu0817at 815.922 kb on - strand, within Atu0817at 815.979 kb on - strand, within Atu0817at 815.979 kb on - strand, within Atu0817at 815.984 kb on - strand, within Atu0817at 816.002 kb on - strand, within Atu0817at 816.041 kb on + strand, within Atu0817at 816.068 kb on + strand, within Atu0817at 816.087 kb on + strand, within Atu0817at 816.143 kb on + strand, within Atu0817at 816.144 kb on - strand, within Atu0817at 816.144 kb on - strand, within Atu0817at 816.316 kb on + strand, within Atu0817at 816.324 kb on - strand, within Atu0817at 816.427 kb on + strandat 816.432 kb on - strandat 816.444 kb on + strandat 816.454 kb on + strandat 816.462 kb on - strandat 816.462 kb on - strandat 816.462 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
813,145 + -1.3
813,145 + -0.1
813,145 + -0.9
813,218 + -1.8
813,594 + +0.0
813,597 - -0.3
813,602 - +0.3
813,678 + Atu0815 0.21 +7.0
813,702 - Atu0815 0.36 -0.3
813,704 + Atu0815 0.37 +0.8
813,712 - Atu0815 0.42 -0.5
813,780 + Atu0815 0.84 +0.0
813,840 + -1.3
813,885 + -0.3
813,893 - +3.5
813,893 - -0.5
814,104 - +0.2
814,112 + +0.2
814,157 - +1.9
814,163 + -0.6
814,168 + +0.0
814,193 - Atu0816 0.11 -0.1
814,198 - Atu0816 0.12 -1.9
814,210 - Atu0816 0.12 -0.7
814,210 - Atu0816 0.12 +2.0
814,251 + Atu0816 0.15 -0.1
814,259 - Atu0816 0.16 +0.3
814,273 + Atu0816 0.17 -0.1
814,278 + Atu0816 0.17 -0.2
814,330 - Atu0816 0.20 -0.3
814,359 - Atu0816 0.22 +0.0
814,382 + Atu0816 0.24 -1.0
814,390 - Atu0816 0.24 -0.2
814,479 - Atu0816 0.30 +2.6
814,481 + Atu0816 0.31 +0.0
814,518 + Atu0816 0.33 +0.6
814,518 + Atu0816 0.33 -0.6
814,526 - Atu0816 0.34 -1.7
814,560 - Atu0816 0.36 +0.6
814,602 - Atu0816 0.39 -0.4
814,638 + Atu0816 0.41 +0.0
814,732 + Atu0816 0.47 -0.3
814,764 - Atu0816 0.50 -1.5
814,766 - Atu0816 0.50 +1.7
814,783 - Atu0816 0.51 +0.4
814,788 - Atu0816 0.51 +0.3
814,793 - Atu0816 0.52 -1.7
814,955 - Atu0816 0.62 -2.7
815,071 - Atu0816 0.70 -1.1
815,075 - Atu0816 0.71 +1.5
815,159 - Atu0816 0.76 +0.8
815,219 + Atu0816 0.80 -1.1
815,263 - Atu0816 0.83 +1.2
815,291 - Atu0816 0.85 +0.2
815,345 - Atu0816 0.89 +0.3
815,354 + Atu0816 0.89 -0.2
815,369 - +0.5
815,469 - -0.4
815,627 + Atu0817 0.12 -0.6
815,768 + Atu0817 0.27 -0.6
815,770 + Atu0817 0.27 +0.0
815,770 + Atu0817 0.27 -1.3
815,788 + Atu0817 0.29 -1.9
815,788 + Atu0817 0.29 +0.5
815,921 + Atu0817 0.43 -0.5
815,922 - Atu0817 0.43 -0.5
815,979 - Atu0817 0.49 -0.2
815,979 - Atu0817 0.49 -0.3
815,984 - Atu0817 0.50 -0.7
816,002 - Atu0817 0.51 -0.4
816,041 + Atu0817 0.56 +0.2
816,068 + Atu0817 0.58 -0.6
816,087 + Atu0817 0.60 +1.7
816,143 + Atu0817 0.66 -1.5
816,144 - Atu0817 0.66 +0.4
816,144 - Atu0817 0.66 -0.8
816,316 + Atu0817 0.84 +0.4
816,324 - Atu0817 0.85 -0.1
816,427 + +0.7
816,432 - -0.1
816,444 + +2.1
816,454 + -2.0
816,462 - -2.3
816,462 - -0.2
816,462 - +3.3

Or see this region's nucleotide sequence